Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21715

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,340,522	+				-0.5
5,340,525	-				+0.5
5,340,644	-				+1.0
5,340,644	-				-1.0
5,340,650	-				+0.3
5,340,650	-				-0.3
5,340,662	-				+0.2
5,340,707	+				+0.5
5,340,708	-				+1.4
5,340,708	-				-0.3
5,340,796	-				-0.3
5,340,799	+				+0.1
5,340,835	-				-0.5
5,340,835	-				+0.5
5,340,837	+				+0.1
5,340,838	-				-0.7
5,340,838	-				-0.2
5,340,859	+				-2.1
5,340,974	-				-0.7
5,341,211	+		CA265_RS21715	0.28	-1.0
5,341,244	+		CA265_RS21715	0.30	-0.8
5,341,256	-		CA265_RS21715	0.31	-1.5
5,341,283	+		CA265_RS21715	0.33	-0.5
5,341,312	+		CA265_RS21715	0.35	-3.0
5,341,356	+		CA265_RS21715	0.39	-2.7
5,341,410	-		CA265_RS21715	0.43	+0.4
5,341,424	+		CA265_RS21715	0.44	-0.5
5,341,484	+		CA265_RS21715	0.48	+1.8
5,341,523	+				+0.3
5,341,524	-		CA265_RS21715	0.51	-2.0
5,341,550	-		CA265_RS21715	0.53	-1.1
5,341,551	+		CA265_RS21715	0.54	-0.6
5,341,551	+		CA265_RS21715	0.54	-0.7
5,341,552	-		CA265_RS21715	0.54	-0.1
5,341,552	-		CA265_RS21715	0.54	+0.0
5,341,647	-		CA265_RS21715	0.61	+1.0
5,341,716	-		CA265_RS21715	0.66	+0.1
5,341,716	-		CA265_RS21715	0.66	+0.8
5,341,747	+		CA265_RS21715	0.69	-2.8
5,341,786	+		CA265_RS21715	0.71	-1.3
5,341,803	-		CA265_RS21715	0.73	-0.7
5,341,913	+		CA265_RS21715	0.81	-0.8
5,341,913	+		CA265_RS21715	0.81	-0.9
5,341,914	-		CA265_RS21715	0.81	+1.3
5,341,975	-		CA265_RS21715	0.86	+0.1
5,341,993	+		CA265_RS21715	0.87	-0.5
5,342,175	-				-0.3
5,342,209	+		CA265_RS21720	0.10	-0.5
5,342,222	+		CA265_RS21720	0.12	-0.5
5,342,223	-		CA265_RS21720	0.12	+0.7
5,342,223	-		CA265_RS21720	0.12	-0.4
5,342,229	-		CA265_RS21720	0.13	+0.6
5,342,274	+		CA265_RS21720	0.21	-0.3
5,342,289	+		CA265_RS21720	0.24	-0.2
5,342,290	-		CA265_RS21720	0.24	+0.0
5,342,325	-		CA265_RS21720	0.30	+0.3
5,342,343	-		CA265_RS21720	0.33	+0.1
5,342,367	+		CA265_RS21720	0.37	-0.5
5,342,368	-		CA265_RS21720	0.37	+0.6
5,342,412	+		CA265_RS21720	0.45	-0.2
5,342,412	+		CA265_RS21720	0.45	+1.0
5,342,509	+		CA265_RS21720	0.62	-0.3
5,342,615	+		CA265_RS21720	0.80	-1.7
5,342,615	+		CA265_RS21720	0.80	+2.1
5,342,617	+		CA265_RS21720	0.80	-0.1
5,342,618	-		CA265_RS21720	0.81	-0.1
5,342,618	-		CA265_RS21720	0.81	+0.0
5,342,621	+		CA265_RS21720	0.81	+1.0
5,342,627	-		CA265_RS21720	0.82	+0.8
5,342,720	+				-0.4
5,342,742	-				-1.0
5,342,764	+				-1.7
5,342,791	+				-0.0
5,342,857	+				-0.2
5,342,885	-				+0.5
5,342,885	-				+0.3
5,342,885	-				-0.6
5,342,897	-				-0.5
5,342,924	+				-0.8
5,342,961	-				+0.7
5,342,966	-				+0.4
5,343,002	-				-0.2
5,343,002	-				-0.4
5,343,033	-		CA265_RS21725	0.11	-0.1
5,343,034	+		CA265_RS21725	0.12	-0.5
5,343,034	+		CA265_RS21725	0.12	-0.3