Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19415

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,817,812	+		CA265_RS19405	0.17	-1.4
4,817,812	+		CA265_RS19405	0.17	+0.8
4,817,812	+		CA265_RS19405	0.17	-2.1
4,817,847	-		CA265_RS19405	0.24	+0.8
4,817,877	-		CA265_RS19405	0.30	+1.2
4,817,914	+		CA265_RS19405	0.37	+0.1
4,817,930	-		CA265_RS19405	0.40	-0.3
4,818,037	+		CA265_RS19405	0.61	-0.1
4,818,037	+		CA265_RS19405	0.61	-2.2
4,818,038	-		CA265_RS19405	0.62	+0.2
4,818,058	+		CA265_RS19405	0.65	-0.7
4,818,104	+		CA265_RS19405	0.75	-0.4
4,818,138	-		CA265_RS19405	0.81	+2.1
4,818,138	-		CA265_RS19405	0.81	+0.7
4,818,159	-		CA265_RS19405	0.85	-2.2
4,818,235	+				+0.1
4,818,239	+				+0.4
4,818,240	-				+0.4
4,818,314	+		CA265_RS19410	0.18	-0.7
4,818,315	-		CA265_RS19410	0.18	-0.3
4,818,368	+		CA265_RS19410	0.30	-2.0
4,818,443	+		CA265_RS19410	0.46	+0.1
4,818,577	-		CA265_RS19410	0.76	-0.0
4,818,581	-		CA265_RS19410	0.77	-1.0
4,818,606	+		CA265_RS19410	0.83	+0.4
4,818,672	-				+1.0
4,818,696	-				+0.3
4,818,696	-				-0.1
4,818,733	-				+0.4
4,818,737	-				-0.3
4,818,857	+		CA265_RS19415	0.29	-0.3
4,818,857	+		CA265_RS19415	0.29	-1.7
4,818,858	-		CA265_RS19415	0.30	-1.9
4,818,858	-		CA265_RS19415	0.30	-3.3
4,818,858	-		CA265_RS19415	0.30	-1.6
4,818,945	+		CA265_RS19415	0.65	-2.6
4,819,001	-		CA265_RS19415	0.87	-1.2
4,819,043	-				+1.1
4,819,069	-				-0.1
4,819,075	+				-2.4
4,819,087	+				-0.7
4,819,087	+				-1.6
4,819,087	+				-1.8
4,819,087	+				-1.0
4,819,088	-				+0.1
4,819,119	+				+0.5
4,819,119	+				-0.3
4,819,119	+				+0.4
4,819,119	+				+0.3
4,819,273	-		CA265_RS19420	0.56	+0.0
4,819,371	+				+0.6
4,819,405	+				+0.6
4,819,490	+				+1.0
4,819,491	-				+1.2
4,819,492	+				-1.9
4,819,523	-				+1.5
4,819,629	-		CA265_RS19425	0.16	+1.0
4,819,683	+		CA265_RS19425	0.21	-0.4
4,819,684	-		CA265_RS19425	0.21	-0.4
4,819,761	+		CA265_RS19425	0.27	-0.2
4,819,761	+		CA265_RS19425	0.27	+0.3
4,819,803	-		CA265_RS19425	0.30	+0.4
4,819,877	-		CA265_RS19425	0.36	-0.7
4,819,885	+		CA265_RS19425	0.36	+0.3
4,819,930	-		CA265_RS19425	0.40	+0.0
4,819,956	-		CA265_RS19425	0.42	+0.3
4,819,956	-		CA265_RS19425	0.42	+1.0
4,819,962	-		CA265_RS19425	0.42	+0.4