Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19385

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,810,280	-		CA265_RS19380	0.62	-0.7
4,810,283	+		CA265_RS19380	0.62	-3.3
4,810,284	-		CA265_RS19380	0.62	-0.9
4,810,406	-		CA265_RS19380	0.75	-0.2
4,810,406	-		CA265_RS19380	0.75	+0.5
4,810,411	+		CA265_RS19380	0.75	-1.4
4,810,415	-		CA265_RS19380	0.76	-0.8
4,810,477	+		CA265_RS19380	0.82	-1.7
4,810,480	-		CA265_RS19380	0.82	-1.2
4,810,505	+		CA265_RS19380	0.85	-0.8
4,810,506	-		CA265_RS19380	0.85	-0.3
4,810,599	+				-0.1
4,810,600	-				-0.5
4,810,600	-				+0.3
4,810,770	-				+0.2
4,810,770	-				+1.4
4,810,770	-				+0.3
4,810,789	+				+0.2
4,810,789	+				-1.2
4,810,790	-				-0.3
4,810,790	-				+0.6
4,810,891	+				+0.5
4,810,903	-				+0.3
4,810,910	-				-1.7
4,810,910	-				+0.3
4,810,918	-				-1.4
4,810,946	-				-0.2
4,810,950	+				-0.1
4,810,955	-				+0.3
4,810,977	+				-0.0
4,810,978	-				+0.2
4,810,978	-				-0.8
4,810,982	-				+0.3
4,810,982	-				+0.2
4,810,982	-				-0.4
4,811,056	+				+0.6
4,811,056	+				+0.3
4,811,067	-				-0.0
4,811,108	+				+0.2
4,811,130	-				-0.1
4,811,130	-				-0.0
4,811,167	-				+0.9
4,811,167	-				-0.2
4,811,167	-				-0.2
4,811,268	+				-1.8
4,811,269	-				-0.6
4,811,281	+				-1.4
4,811,281	+				-0.6
4,811,390	+		CA265_RS19385	0.14	-1.0
4,811,391	-		CA265_RS19385	0.14	+0.5
4,811,391	-		CA265_RS19385	0.14	-1.2
4,811,419	-		CA265_RS19385	0.17	-1.1
4,811,481	+		CA265_RS19385	0.23	-0.2
4,811,549	-		CA265_RS19385	0.30	-1.3
4,811,609	-		CA265_RS19385	0.36	-0.2
4,811,646	-		CA265_RS19385	0.39	-1.8
4,811,695	-		CA265_RS19385	0.44	-0.6
4,811,695	-		CA265_RS19385	0.44	-0.8
4,811,703	+		CA265_RS19385	0.45	-2.2
4,811,750	+		CA265_RS19385	0.50	-0.1
4,811,758	+		CA265_RS19385	0.51	-1.9
4,811,765	-		CA265_RS19385	0.52	+0.2
4,811,806	+		CA265_RS19385	0.56	-1.4
4,811,807	-		CA265_RS19385	0.56	-1.7
4,811,807	-		CA265_RS19385	0.56	+0.3
4,811,904	-		CA265_RS19385	0.66	-0.7
4,811,912	+		CA265_RS19385	0.66	-2.6
4,811,973	+		CA265_RS19385	0.73	-0.8
4,811,974	-		CA265_RS19385	0.73	-0.6
4,811,998	+		CA265_RS19385	0.75	-1.6
4,812,007	+		CA265_RS19385	0.76	-2.0
4,812,040	+		CA265_RS19385	0.79	-1.3
4,812,050	+		CA265_RS19385	0.80	-1.3
4,812,096	+		CA265_RS19385	0.85	-1.4
4,812,225	-				-1.0
4,812,236	+				-0.8
4,812,237	-				-0.8
4,812,257	-				+0.1
4,812,286	+				-0.6
4,812,303	+				+0.4
4,812,307	+				-0.2
4,812,389	+		CA265_RS19390	0.15	+0.3
4,812,393	+		CA265_RS19390	0.15	+0.3
4,812,424	+		CA265_RS19390	0.19	+0.1
4,812,425	-		CA265_RS19390	0.19	+0.4
4,812,516	+		CA265_RS19390	0.29	+0.1
4,812,533	+		CA265_RS19390	0.31	-0.5
4,812,537	+		CA265_RS19390	0.32	+0.3
4,812,537	+		CA265_RS19390	0.32	+0.0
4,812,537	+		CA265_RS19390	0.32	-0.3
4,812,537	+		CA265_RS19390	0.32	+0.3
4,812,537	+		CA265_RS19390	0.32	+0.7
4,812,537	+		CA265_RS19390	0.32	+1.4
4,812,537	+		CA265_RS19390	0.32	+0.1
4,812,538	-		CA265_RS19390	0.32	-0.3
4,812,681	+		CA265_RS19390	0.49	-0.3
4,812,699	+		CA265_RS19390	0.51	+0.8
4,812,700	-		CA265_RS19390	0.51	+0.3
4,812,927	+		CA265_RS19390	0.77	+0.6
4,812,970	-		CA265_RS19390	0.82	+0.4
4,813,021	+		CA265_RS19390	0.88	+0.8
4,813,064	+				+1.0
4,813,065	-				+1.4
4,813,065	-				-0.2
4,813,068	+				-0.2
4,813,069	-				-0.6
4,813,072	+				+0.2
4,813,073	-				-0.4
4,813,079	-				+0.7
4,813,090	+				-0.9
4,813,179	-				-1.4
4,813,183	+				+0.6