Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19235

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,779,012	-		CA265_RS19230	0.14	-0.8
4,779,012	-		CA265_RS19230	0.14	-1.4
4,779,048	+		CA265_RS19230	0.17	-2.2
4,779,051	+		CA265_RS19230	0.17	-0.4
4,779,051	+		CA265_RS19230	0.17	-3.1
4,779,057	-		CA265_RS19230	0.18	-1.2
4,779,111	+		CA265_RS19230	0.23	-1.7
4,779,201	+		CA265_RS19230	0.31	-0.7
4,779,273	-		CA265_RS19230	0.37	-1.4
4,779,353	+		CA265_RS19230	0.44	-1.9
4,779,395	-		CA265_RS19230	0.48	-2.8
4,779,399	+		CA265_RS19230	0.49	-2.1
4,779,399	+		CA265_RS19230	0.49	+0.2
4,779,443	-		CA265_RS19230	0.52	-1.6
4,779,470	+		CA265_RS19230	0.55	-2.0
4,779,471	-		CA265_RS19230	0.55	-2.5
4,779,474	+		CA265_RS19230	0.55	-2.5
4,779,530	+		CA265_RS19230	0.60	-1.9
4,779,569	+		CA265_RS19230	0.64	-3.3
4,779,727	+		CA265_RS19230	0.78	-1.9
4,779,743	+		CA265_RS19230	0.79	-1.9
4,779,758	-		CA265_RS19230	0.81	-3.0
4,779,771	+		CA265_RS19230	0.82	+0.4
4,779,773	+		CA265_RS19230	0.82	-1.5
4,779,773	+		CA265_RS19230	0.82	-2.6
4,779,773	+		CA265_RS19230	0.82	-0.9
4,779,805	-		CA265_RS19230	0.85	-1.1
4,779,852	+		CA265_RS19230	0.89	-2.3
4,779,853	-		CA265_RS19230	0.89	-3.5
4,779,861	+				-2.5
4,779,971	+				-3.3
4,779,971	+				-3.6
4,779,972	-				-2.5
4,779,984	-				-0.4
4,780,036	+				-2.5
4,780,036	+				-2.1
4,780,036	+				-1.0
4,780,037	-				-0.6
4,780,086	+		CA265_RS19235	0.14	-2.1
4,780,335	-		CA265_RS19235	0.42	-1.2
4,780,345	+		CA265_RS19235	0.43	-3.1
4,780,798	+				-1.1
4,780,999	+		CA265_RS19240	0.60	-3.7
4,780,999	+		CA265_RS19240	0.60	-2.6
4,781,109	+				-1.7
4,781,125	+				-1.5
4,781,164	+				+1.1
4,781,186	-				-2.7
4,781,196	+				-0.6
4,781,223	+				-0.8
4,781,242	+				+0.2
4,781,242	+				-0.9
4,781,274	+				-2.2
4,781,274	+				-0.0
4,781,274	+				-1.4
4,781,274	+				-0.3
4,781,275	-				-0.2
4,781,276	+				-0.8
4,781,276	+				-0.7
4,781,276	+				-0.1
4,781,277	-				-2.2
4,781,277	-				-2.7
4,781,311	+		CA265_RS19245	0.13	-1.4
4,781,324	+		CA265_RS19245	0.15	-1.5
4,781,325	-		CA265_RS19245	0.15	-2.3
4,781,325	-		CA265_RS19245	0.15	-3.6
4,781,393	+		CA265_RS19245	0.26	-0.7
4,781,426	-		CA265_RS19245	0.32	-1.3
4,781,495	+		CA265_RS19245	0.44	-0.3
4,781,496	-		CA265_RS19245	0.44	-2.8
4,781,496	-		CA265_RS19245	0.44	-3.3
4,781,533	+		CA265_RS19245	0.50	-1.3
4,781,533	+		CA265_RS19245	0.50	+1.8
4,781,534	-		CA265_RS19245	0.50	-1.9
4,781,537	+		CA265_RS19245	0.51	+0.3
4,781,538	-		CA265_RS19245	0.51	-0.4
4,781,538	-		CA265_RS19245	0.51	-1.4
4,781,550	-		CA265_RS19245	0.53	-3.3
4,781,607	-		CA265_RS19245	0.63	-1.8
4,781,619	-		CA265_RS19245	0.65	-2.2
4,781,628	-		CA265_RS19245	0.66	-2.2
4,781,638	+		CA265_RS19245	0.68	-1.4
4,781,639	-		CA265_RS19245	0.68	-3.4
4,781,643	+		CA265_RS19245	0.69	-0.3
4,781,649	+		CA265_RS19245	0.70	-0.2
4,781,649	+		CA265_RS19245	0.70	-0.2
4,781,649	+		CA265_RS19245	0.70	-1.6
4,781,650	-		CA265_RS19245	0.70	-0.6
4,781,650	-		CA265_RS19245	0.70	+0.8
4,781,693	+		CA265_RS19245	0.77	-1.4
4,781,693	+		CA265_RS19245	0.77	-1.2
4,781,694	-		CA265_RS19245	0.77	-2.6
4,781,696	-		CA265_RS19245	0.78	-1.9
4,781,721	+		CA265_RS19245	0.82	-0.5
4,781,725	+		CA265_RS19245	0.83	-1.6
4,781,819	-				-2.6
4,781,827	+				-1.0
4,781,828	-				-2.2
4,781,836	-				-1.1