Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19195

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,770,855	+		CA265_RS19185	0.79	-1.8
4,770,871	+		CA265_RS19185	0.80	-2.1
4,770,886	-		CA265_RS19185	0.80	-1.9
4,771,009	+		CA265_RS19185	0.87	-0.7
4,771,019	+		CA265_RS19185	0.87	-2.2
4,771,045	+		CA265_RS19185	0.89	-3.4
4,771,045	+		CA265_RS19185	0.89	-0.8
4,771,045	+		CA265_RS19185	0.89	+0.2
4,771,046	-		CA265_RS19185	0.89	-1.8
4,771,060	+		CA265_RS19185	0.89	-1.3
4,771,067	-		CA265_RS19185	0.90	-1.4
4,771,068	+		CA265_RS19185	0.90	-2.6
4,771,068	+		CA265_RS19185	0.90	-1.8
4,771,069	-		CA265_RS19185	0.90	-1.8
4,771,075	+				-3.0
4,771,078	+				-0.8
4,771,079	-				-2.4
4,771,099	+				-1.1
4,771,099	+				-1.5
4,771,100	-				-2.4
4,771,154	+				-0.7
4,771,166	-				-3.5
4,771,166	-				-3.3
4,771,267	+				-0.3
4,771,273	-				-0.7
4,771,293	+				-1.5
4,771,294	-				+0.2
4,771,300	+				-2.1
4,771,300	+				-3.4
4,771,301	-				+0.7
4,771,314	+				-1.6
4,771,314	+				-1.5
4,771,401	-		CA265_RS19190	0.17	+0.4
4,771,435	-		CA265_RS19190	0.23	-0.6
4,771,448	+		CA265_RS19190	0.25	-1.3
4,771,448	+		CA265_RS19190	0.25	-0.6
4,771,448	+		CA265_RS19190	0.25	-1.1
4,771,449	-		CA265_RS19190	0.25	+0.9
4,771,449	-		CA265_RS19190	0.25	+0.4
4,771,450	+		CA265_RS19190	0.26	-1.6
4,771,491	-		CA265_RS19190	0.33	-0.5
4,771,598	-		CA265_RS19190	0.52	-1.1
4,771,598	-		CA265_RS19190	0.52	-0.1
4,771,631	+		CA265_RS19190	0.58	+2.7
4,771,631	+		CA265_RS19190	0.58	-0.6
4,771,632	-		CA265_RS19190	0.59	+0.4
4,771,636	+		CA265_RS19190	0.59	-0.1
4,771,637	-		CA265_RS19190	0.60	+0.5
4,771,659	-		CA265_RS19190	0.64	-0.2
4,771,669	+		CA265_RS19190	0.65	+0.6
4,771,756	+		CA265_RS19190	0.81	-0.3
4,771,757	-		CA265_RS19190	0.81	-0.4
4,771,863	+				-0.8
4,771,864	-				-0.8
4,772,116	-		CA265_RS19195	0.27	-2.2
4,772,152	+		CA265_RS19195	0.31	-3.3
4,772,152	+		CA265_RS19195	0.31	-2.6
4,772,172	-		CA265_RS19195	0.33	-0.7
4,772,217	+		CA265_RS19195	0.37	-0.8
4,772,239	-		CA265_RS19195	0.40	-3.8
4,772,248	-		CA265_RS19195	0.40	-2.6
4,772,311	-		CA265_RS19195	0.47	-2.3
4,772,342	+		CA265_RS19195	0.50	-1.3
4,772,378	+		CA265_RS19195	0.54	-1.7
4,772,379	-		CA265_RS19195	0.54	-0.1
4,772,408	+		CA265_RS19195	0.57	-1.3
4,772,517	-		CA265_RS19195	0.68	-1.7
4,772,521	-		CA265_RS19195	0.68	-1.8
4,772,521	-		CA265_RS19195	0.68	-0.8
4,772,550	+		CA265_RS19195	0.71	-0.3
4,772,580	-		CA265_RS19195	0.74	-1.7
4,772,748	-				-0.8
4,772,811	+				-0.1
4,772,820	+				-1.1
4,772,822	+				-2.7
4,772,912	+				+0.4
4,772,920	+				+0.8
4,772,938	+				+1.0
4,772,938	+				-0.2
4,772,962	+				+1.9
4,773,042	+		CA265_RS19200	0.10	-0.1
4,773,042	+		CA265_RS19200	0.10	-0.5
4,773,043	-		CA265_RS19200	0.10	+0.4
4,773,047	+		CA265_RS19200	0.11	-0.3
4,773,063	+		CA265_RS19200	0.12	+0.3
4,773,081	+		CA265_RS19200	0.14	-0.4
4,773,094	+		CA265_RS19200	0.15	-0.8
4,773,095	-		CA265_RS19200	0.15	+0.9
4,773,099	+		CA265_RS19200	0.16	-0.2
4,773,105	+		CA265_RS19200	0.16	+0.8
4,773,125	-		CA265_RS19200	0.18	+0.3
4,773,178	+		CA265_RS19200	0.23	+0.1
4,773,179	-		CA265_RS19200	0.23	+1.3
4,773,179	-		CA265_RS19200	0.23	-0.3
4,773,228	+		CA265_RS19200	0.28	-0.1
4,773,228	+		CA265_RS19200	0.28	-0.6
4,773,233	-		CA265_RS19200	0.28	-0.2
4,773,233	-		CA265_RS19200	0.28	+0.1
4,773,254	-		CA265_RS19200	0.30	-0.2
4,773,254	-		CA265_RS19200	0.30	-0.9
4,773,254	-		CA265_RS19200	0.30	-0.7
4,773,290	+		CA265_RS19200	0.34	-1.0
4,773,305	+		CA265_RS19200	0.35	-0.0
4,773,330	-		CA265_RS19200	0.38	-0.4
4,773,330	-		CA265_RS19200	0.38	-0.1
4,773,362	-		CA265_RS19200	0.41	+0.6
4,773,381	+		CA265_RS19200	0.42	+0.0
4,773,382	-		CA265_RS19200	0.43	-1.6
4,773,534	+		CA265_RS19200	0.57	+0.2
4,773,534	+		CA265_RS19200	0.57	-0.2
4,773,534	+		CA265_RS19200	0.57	-2.6
4,773,534	+		CA265_RS19200	0.57	-0.9
4,773,535	-		CA265_RS19200	0.57	-0.5
4,773,538	-		CA265_RS19200	0.57	-0.9
4,773,540	-		CA265_RS19200	0.58	+0.2
4,773,571	-		CA265_RS19200	0.61	-0.0
4,773,582	+		CA265_RS19200	0.62	-0.8
4,773,582	+		CA265_RS19200	0.62	+0.3
4,773,631	-		CA265_RS19200	0.66	-1.4
4,773,631	-		CA265_RS19200	0.66	+1.0
4,773,657	+		CA265_RS19200	0.69	-0.2
4,773,684	+		CA265_RS19200	0.71	-0.0
4,773,684	+		CA265_RS19200	0.71	-0.7
4,773,745	-		CA265_RS19200	0.77	-0.6
4,773,769	+		CA265_RS19200	0.79	+0.1
4,773,770	-		CA265_RS19200	0.80	+2.5
4,773,775	-		CA265_RS19200	0.80	-0.2
4,773,775	-		CA265_RS19200	0.80	-0.2