Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18830

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,680,243	-		CA265_RS18820	0.68	-0.5
4,680,360	+		CA265_RS18820	0.83	+0.4
4,680,547	+				-0.4
4,680,548	-				+0.1
4,680,563	+				+0.7
4,680,564	-				-0.5
4,680,652	-				+0.1
4,680,725	-		CA265_RS18825	0.20	+0.2
4,680,729	+		CA265_RS18825	0.21	+0.2
4,680,754	-		CA265_RS18825	0.26	-0.2
4,680,911	+		CA265_RS18825	0.56	-0.1
4,680,911	+		CA265_RS18825	0.56	-0.1
4,680,912	-		CA265_RS18825	0.57	-1.8
4,680,913	+		CA265_RS18825	0.57	-0.8
4,680,989	+		CA265_RS18825	0.72	+1.2
4,680,994	+		CA265_RS18825	0.72	+0.5
4,681,037	+		CA265_RS18825	0.81	-0.4
4,681,100	+				-0.5
4,681,102	+				-1.0
4,681,116	-				-0.7
4,681,170	+				+0.3
4,681,214	+				+0.4
4,681,228	-				+0.6
4,681,412	+				-0.3
4,681,572	+		CA265_RS18830	0.10	-1.5
4,681,662	+		CA265_RS18830	0.13	-0.6
4,681,896	+		CA265_RS18830	0.20	-0.3
4,681,909	-		CA265_RS18830	0.21	-0.9
4,681,949	+		CA265_RS18830	0.22	+0.3
4,681,979	+		CA265_RS18830	0.23	+0.5
4,682,069	+		CA265_RS18830	0.26	-0.6
4,682,141	-		CA265_RS18830	0.28	-1.6
4,682,182	+		CA265_RS18830	0.29	-1.6
4,682,183	-		CA265_RS18830	0.29	-0.2
4,682,244	-		CA265_RS18830	0.31	+0.1
4,682,271	-		CA265_RS18830	0.32	+0.3
4,682,535	+		CA265_RS18830	0.40	-1.2
4,682,539	+		CA265_RS18830	0.40	-0.3
4,682,574	+		CA265_RS18830	0.41	-2.1
4,682,609	+		CA265_RS18830	0.43	-0.7
4,682,680	-		CA265_RS18830	0.45	-0.5
4,682,740	-		CA265_RS18830	0.47	-1.5
4,682,749	-		CA265_RS18830	0.47	-0.6
4,682,781	+		CA265_RS18830	0.48	-0.6
4,682,782	-		CA265_RS18830	0.48	+0.4
4,682,783	+		CA265_RS18830	0.48	-1.3
4,682,826	+		CA265_RS18830	0.49	-1.7
4,682,827	-		CA265_RS18830	0.49	-1.3
4,683,010	-		CA265_RS18830	0.55	-1.4
4,683,049	-		CA265_RS18830	0.56	-1.1
4,683,114	+		CA265_RS18830	0.58	+1.4
4,683,201	+		CA265_RS18830	0.61	+0.1
4,683,269	+		CA265_RS18830	0.63	+0.5
4,683,306	-		CA265_RS18830	0.64	-1.3
4,683,534	+		CA265_RS18830	0.71	+0.0
4,683,641	-		CA265_RS18830	0.75	+0.9
4,683,723	-		CA265_RS18830	0.77	+1.1
4,683,727	+		CA265_RS18830	0.77	-0.9
4,683,729	+		CA265_RS18830	0.77	-1.5
4,683,735	+		CA265_RS18830	0.78	-0.5
4,683,758	-		CA265_RS18830	0.78	+0.6
4,683,785	-		CA265_RS18830	0.79	-0.6
4,683,885	-		CA265_RS18830	0.82	+0.1
4,683,905	+				-0.9
4,683,974	+		CA265_RS18830	0.85	-0.4
4,683,988	-		CA265_RS18830	0.85	-0.6
4,684,106	-		CA265_RS18830	0.89	-1.5
4,684,107	+		CA265_RS18830	0.89	-1.8
4,684,134	+		CA265_RS18830	0.90	+0.4
4,684,324	-				+0.1
4,684,383	-				-0.6
4,684,435	-				-1.1
4,684,454	+				-0.8
4,684,454	+				-0.1
4,684,455	-				-0.4
4,684,459	+				+2.3
4,684,537	+				+0.7
4,684,569	-				-1.5
4,684,592	-				-0.6
4,684,592	-				-1.0
4,684,664	-				-0.5
4,684,664	-				-0.7
4,684,884	+		CA265_RS18835	0.15	-0.1
4,684,884	+		CA265_RS18835	0.15	-1.5
4,684,885	-		CA265_RS18835	0.15	-0.6
4,684,899	-		CA265_RS18835	0.15	-0.8
4,684,928	+		CA265_RS18835	0.16	-0.6
4,684,929	-		CA265_RS18835	0.16	-1.6
4,685,037	+		CA265_RS18835	0.20	-1.9
4,685,078	-		CA265_RS18835	0.21	-0.7
4,685,223	-		CA265_RS18835	0.27	-0.7
4,685,225	+		CA265_RS18835	0.27	+0.6
4,685,225	+		CA265_RS18835	0.27	+1.0
4,685,413	+		CA265_RS18835	0.33	-0.1
4,685,413	+		CA265_RS18835	0.33	-0.2