Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18760

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,668,880	+		CA265_RS18755	0.36	-2.4
4,668,954	+		CA265_RS18755	0.42	-2.5
4,669,038	+		CA265_RS18755	0.49	-2.5
4,669,038	+		CA265_RS18755	0.49	-0.7
4,669,231	-		CA265_RS18755	0.64	-2.7
4,669,322	+		CA265_RS18755	0.71	-0.1
4,669,327	+		CA265_RS18755	0.72	-1.0
4,669,328	-		CA265_RS18755	0.72	-2.1
4,669,338	-		CA265_RS18755	0.73	-0.9
4,669,344	+		CA265_RS18755	0.73	-2.9
4,669,344	+		CA265_RS18755	0.73	+0.7
4,669,418	+		CA265_RS18755	0.79	-2.5
4,669,474	-		CA265_RS18755	0.83	-1.5
4,669,513	-		CA265_RS18755	0.87	-2.9
4,669,606	-				-0.9
4,669,616	+				-1.4
4,669,663	-				-1.6
4,669,757	+				-1.9
4,669,803	+				-1.9
4,669,872	-		CA265_RS18760	0.13	-1.2
4,669,880	+		CA265_RS18760	0.14	-2.4
4,669,987	+		CA265_RS18760	0.29	-3.0
4,670,106	-		CA265_RS18760	0.45	-1.2
4,670,140	+		CA265_RS18760	0.50	-0.3
4,670,199	+		CA265_RS18760	0.58	-1.0
4,670,199	+		CA265_RS18760	0.58	-1.7
4,670,200	-		CA265_RS18760	0.58	-2.4
4,670,200	-		CA265_RS18760	0.58	-1.8
4,670,200	-		CA265_RS18760	0.58	-1.4
4,670,268	-		CA265_RS18760	0.67	-1.9
4,670,346	-		CA265_RS18760	0.78	-1.8
4,670,346	-		CA265_RS18760	0.78	-2.1
4,670,390	-		CA265_RS18760	0.84	-0.8
4,670,393	+		CA265_RS18760	0.85	-0.6
4,670,399	+		CA265_RS18760	0.85	-2.1
4,670,442	+				-1.5
4,670,443	-				-3.2
4,670,498	+				+0.2
4,670,498	+				-0.6
4,670,502	+				+0.5
4,670,502	+				-0.0
4,670,523	-				-0.0
4,670,530	+				+0.3
4,670,537	-				+0.1
4,670,611	-				+0.3
4,670,661	+				-0.3
4,670,680	+				+0.1
4,670,712	+				+0.1
4,670,721	+				-0.4
4,670,749	+		CA265_RS18765	0.13	+0.0
4,670,771	+		CA265_RS18765	0.16	+0.3
4,670,792	-		CA265_RS18765	0.19	-0.1
4,670,838	+		CA265_RS18765	0.25	+0.0
4,670,839	-		CA265_RS18765	0.25	-0.0
4,670,918	+		CA265_RS18765	0.36	+0.5
4,670,923	+		CA265_RS18765	0.37	+0.4
4,670,925	+		CA265_RS18765	0.37	-0.3
4,670,926	-		CA265_RS18765	0.37	-0.1
4,670,926	-		CA265_RS18765	0.37	-0.5
4,670,926	-		CA265_RS18765	0.37	+0.5
4,670,957	+		CA265_RS18765	0.42	-0.1
4,670,983	-		CA265_RS18765	0.45	+0.6
4,670,983	-		CA265_RS18765	0.45	+0.5
4,670,983	-		CA265_RS18765	0.45	+0.2
4,671,011	-		CA265_RS18765	0.49	-0.2
4,671,053	+		CA265_RS18765	0.55	+0.3
4,671,053	+		CA265_RS18765	0.55	-0.3
4,671,068	-		CA265_RS18765	0.57	+0.5
4,671,070	+		CA265_RS18765	0.58	+0.5
4,671,120	-		CA265_RS18765	0.65	+0.1
4,671,146	-		CA265_RS18765	0.68	-0.5
4,671,161	-		CA265_RS18765	0.70	-0.6
4,671,246	-		CA265_RS18765	0.82	-0.1
4,671,296	-		CA265_RS18765	0.89	+0.0
4,671,345	-				+0.4
4,671,398	+				+0.7
4,671,398	+				-0.4
4,671,399	-				+1.3
4,671,399	-				+0.7
4,671,399	-				-0.2
4,671,399	-				+0.4
4,671,399	-				+2.0
4,671,431	-				+0.9
4,671,431	-				+0.9
4,671,446	-		CA265_RS18770	0.10	+0.5
4,671,458	+		CA265_RS18770	0.12	-0.0
4,671,458	+		CA265_RS18770	0.12	+1.1
4,671,462	-		CA265_RS18770	0.12	+1.2