Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17775

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,447,509	-		CA265_RS17770	0.25	-3.8
4,447,572	-		CA265_RS17770	0.30	-1.8
4,447,586	+		CA265_RS17770	0.31	+1.1
4,447,587	-		CA265_RS17770	0.31	-2.7
4,447,587	-		CA265_RS17770	0.31	-2.0
4,447,616	-		CA265_RS17770	0.34	-3.2
4,447,617	+		CA265_RS17770	0.34	+0.1
4,447,618	-		CA265_RS17770	0.34	-3.4
4,447,625	-		CA265_RS17770	0.35	-2.5
4,447,627	+		CA265_RS17770	0.35	+0.3
4,447,678	+		CA265_RS17770	0.39	+0.0
4,447,700	-		CA265_RS17770	0.41	-1.5
4,447,704	-		CA265_RS17770	0.41	-1.8
4,447,771	-		CA265_RS17770	0.47	-1.2
4,447,878	-		CA265_RS17770	0.56	-3.0
4,447,896	-		CA265_RS17770	0.58	-2.3
4,447,900	+		CA265_RS17770	0.58	+0.9
4,447,903	-		CA265_RS17770	0.59	-3.2
4,448,054	-		CA265_RS17770	0.72	-1.5
4,448,104	+		CA265_RS17770	0.76	+0.0
4,448,133	-		CA265_RS17770	0.78	-2.1
4,448,137	+		CA265_RS17770	0.79	-0.2
4,448,137	+		CA265_RS17770	0.79	+0.5
4,448,144	+		CA265_RS17770	0.79	+0.9
4,448,341	+				-0.1
4,448,347	+				+1.4
4,448,365	-				-3.2
4,448,369	+				+0.4
4,448,370	-				+1.6
4,448,372	-				-3.3
4,448,399	-				-2.3
4,448,420	-				-1.7
4,448,537	-		CA265_RS17775	0.15	-2.2
4,448,568	+		CA265_RS17775	0.20	-0.8
4,448,569	-		CA265_RS17775	0.20	-4.2
4,448,602	-		CA265_RS17775	0.26	-2.6
4,448,665	-		CA265_RS17775	0.36	-1.6
4,448,710	-		CA265_RS17775	0.44	+0.6
4,448,712	+		CA265_RS17775	0.44	-0.6
4,448,812	-		CA265_RS17775	0.61	-0.4
4,448,828	-		CA265_RS17775	0.64	-1.0
4,448,837	-		CA265_RS17775	0.65	-1.1
4,448,945	-		CA265_RS17775	0.83	-0.5
4,448,953	+		CA265_RS17775	0.84	+0.2
4,448,954	+		CA265_RS17775	0.85	-0.3
4,448,955	-		CA265_RS17775	0.85	-0.0
4,449,015	+				+1.0
4,449,015	+				+1.1
4,449,016	-				+0.6
4,449,028	+				+1.3
4,449,046	-				+1.3
4,449,072	-				-0.6
4,449,079	+				+0.6
4,449,079	+				+0.8
4,449,082	-				-1.5
4,449,103	-				-1.8
4,449,143	+				-0.3
4,449,191	-				-1.6
4,449,232	+				+0.2
4,449,232	+				+0.9
4,449,848	-				-0.6
4,449,866	-				-1.1
4,449,922	-		CA265_RS17785	0.14	+0.6