Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17675

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,407,795	-				+0.5
4,407,795	-				-0.8
4,407,858	+				+0.1
4,407,858	+				+1.0
4,407,904	-				-0.8
4,408,034	+		CA265_RS17670	0.24	-1.4
4,408,035	-		CA265_RS17670	0.25	-0.3
4,408,066	+		CA265_RS17670	0.29	-2.0
4,408,136	+		CA265_RS17670	0.38	-0.1
4,408,137	-		CA265_RS17670	0.38	-0.1
4,408,251	+		CA265_RS17670	0.54	-0.1
4,408,252	-		CA265_RS17670	0.54	+0.0
4,408,264	-		CA265_RS17670	0.56	-0.5
4,408,321	+		CA265_RS17670	0.63	-0.3
4,408,349	+		CA265_RS17670	0.67	+0.5
4,408,385	+		CA265_RS17670	0.72	-0.5
4,408,386	-		CA265_RS17670	0.72	+0.0
4,408,460	-		CA265_RS17670	0.82	-0.2
4,408,460	-		CA265_RS17670	0.82	+0.4
4,408,460	-		CA265_RS17670	0.82	-1.0
4,408,460	-		CA265_RS17670	0.82	-0.1
4,408,505	+		CA265_RS17670	0.88	-0.3
4,408,529	-				+0.8
4,408,532	-				+0.1
4,408,555	+				-0.5
4,408,603	+				-0.0
4,408,636	-				+0.5
4,408,645	+				-0.5
4,408,648	+				-2.0
4,408,648	+				-1.3
4,408,649	-				-0.5
4,408,763	+				-0.2
4,408,786	-				-1.5
4,408,904	+				-0.0
4,408,904	+				-1.5
4,408,931	+				-0.9
4,409,010	+				-0.5
4,409,269	-		CA265_RS17675	0.25	-0.2
4,409,439	-		CA265_RS17675	0.34	-0.5
4,409,545	+		CA265_RS17675	0.40	-0.8
4,409,788	-		CA265_RS17675	0.53	-1.0
4,409,802	-		CA265_RS17675	0.54	-1.5
4,409,920	-		CA265_RS17675	0.60	-0.5
4,409,950	+				+1.5
4,410,095	-		CA265_RS17675	0.69	+0.3
4,410,174	-		CA265_RS17675	0.73	-0.8
4,410,198	+		CA265_RS17675	0.75	-0.8
4,410,352	-		CA265_RS17675	0.83	+0.5
4,410,363	+		CA265_RS17675	0.84	-0.6
4,410,659	+				+0.3
4,410,798	+				-0.4
4,410,809	+				+0.2
4,410,812	+				+0.9
4,410,845	+				-0.3
4,410,846	-				+0.1
4,410,863	-				-1.2
4,410,898	+		CA265_RS17680	0.16	-0.4
4,411,056	-		CA265_RS17680	0.48	-0.0
4,411,056	-		CA265_RS17680	0.48	-1.1
4,411,076	-		CA265_RS17680	0.52	-1.3
4,411,111	+		CA265_RS17680	0.60	-0.2
4,411,112	-		CA265_RS17680	0.60	-0.3
4,411,120	-		CA265_RS17680	0.61	-0.2
4,411,120	-		CA265_RS17680	0.61	-0.7
4,411,154	+		CA265_RS17680	0.68	-0.2
4,411,316	-				+0.3
4,411,319	+				-0.3
4,411,320	-				-1.1
4,411,323	-				-0.1
4,411,324	+				+0.3
4,411,324	+				-0.4
4,411,325	-				+0.5
4,411,325	-				-0.7
4,411,329	-				-0.9
4,411,333	-				-0.0
4,411,347	+				-1.6
4,411,348	-				-1.6
4,411,378	+		CA265_RS17685	0.13	-0.1
4,411,432	+		CA265_RS17685	0.27	-0.0
4,411,432	+		CA265_RS17685	0.27	+1.0
4,411,433	-		CA265_RS17685	0.27	-1.3
4,411,433	-		CA265_RS17685	0.27	+0.1
4,411,434	+		CA265_RS17685	0.27	+1.0
4,411,435	-		CA265_RS17685	0.28	-0.1
4,411,435	-		CA265_RS17685	0.28	+0.5
4,411,435	-		CA265_RS17685	0.28	+1.0
4,411,451	-		CA265_RS17685	0.32	+0.1
4,411,497	-		CA265_RS17685	0.44	+0.5
4,411,516	+		CA265_RS17685	0.49	-1.2
4,411,517	-		CA265_RS17685	0.50	+0.7
4,411,527	-		CA265_RS17685	0.52	-1.7
4,411,560	-		CA265_RS17685	0.61	-1.0
4,411,598	-		CA265_RS17685	0.71	-0.3