Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16390

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,120,734	+		CA265_RS16385	0.37	-0.1
4,120,735	-		CA265_RS16385	0.37	-0.2
4,120,755	+		CA265_RS16385	0.38	+0.1
4,120,812	+		CA265_RS16385	0.42	+1.2
4,120,893	+		CA265_RS16385	0.48	+1.6
4,120,900	-		CA265_RS16385	0.48	-1.5
4,120,904	+		CA265_RS16385	0.48	+0.4
4,121,006	-		CA265_RS16385	0.55	-0.0
4,121,031	+		CA265_RS16385	0.57	+1.5
4,121,032	-		CA265_RS16385	0.57	+0.5
4,121,035	-		CA265_RS16385	0.57	+2.0
4,121,104	+		CA265_RS16385	0.62	+0.3
4,121,147	-		CA265_RS16385	0.65	+2.0
4,121,147	-		CA265_RS16385	0.65	+0.3
4,121,170	+		CA265_RS16385	0.67	-0.1
4,121,171	-		CA265_RS16385	0.67	+0.1
4,121,184	-		CA265_RS16385	0.68	+0.2
4,121,197	-		CA265_RS16385	0.69	-0.5
4,121,198	+		CA265_RS16385	0.69	-0.3
4,121,198	+		CA265_RS16385	0.69	+0.1
4,121,198	+		CA265_RS16385	0.69	+0.9
4,121,332	+		CA265_RS16385	0.78	-0.5
4,121,332	+		CA265_RS16385	0.78	+0.5
4,121,332	+		CA265_RS16385	0.78	-0.0
4,121,394	+		CA265_RS16385	0.82	-0.3
4,121,412	+		CA265_RS16385	0.84	+1.0
4,121,412	+		CA265_RS16385	0.84	-0.3
4,121,414	+		CA265_RS16385	0.84	-0.1
4,121,440	+		CA265_RS16385	0.86	+0.5
4,121,464	+		CA265_RS16385	0.87	-1.0
4,121,464	+		CA265_RS16385	0.87	+0.3
4,121,490	+		CA265_RS16385	0.89	+0.5
4,121,490	+		CA265_RS16385	0.89	+0.6
4,121,523	+				-1.1
4,121,530	-				-0.5
4,121,532	+				-0.3
4,121,532	+				-0.2
4,121,533	-				-0.8
4,121,536	+				+0.1
4,121,537	-				-0.6
4,121,571	+				+1.3
4,121,608	-				-0.3
4,121,620	+				+0.5
4,121,621	-				+0.2
4,121,621	-				-0.1
4,121,665	-				+0.2
4,121,666	+				-0.9
4,121,666	+				-1.1
4,121,677	-				+0.9
4,121,693	-				-0.1
4,121,705	+				+0.2
4,121,761	-				-2.1
4,121,770	+				-1.7
4,121,806	-		CA265_RS16390	0.13	-1.3
4,121,806	-		CA265_RS16390	0.13	-4.0
4,121,828	+		CA265_RS16390	0.16	-2.8
4,121,828	+		CA265_RS16390	0.16	-3.1
4,121,828	+		CA265_RS16390	0.16	-0.5
4,121,910	-		CA265_RS16390	0.28	-2.4
4,121,910	-		CA265_RS16390	0.28	-2.0
4,121,973	-		CA265_RS16390	0.37	-0.6
4,121,987	-		CA265_RS16390	0.39	-1.9
4,122,031	+		CA265_RS16390	0.46	-1.6
4,122,211	+		CA265_RS16390	0.72	-2.0
4,122,211	+		CA265_RS16390	0.72	-1.3
4,122,270	-		CA265_RS16390	0.81	-2.2
4,122,290	+		CA265_RS16390	0.84	-1.9
4,122,292	+		CA265_RS16390	0.84	-2.0
4,122,292	+		CA265_RS16390	0.84	-1.9
4,122,314	-		CA265_RS16390	0.87	-1.8
4,122,337	-				-0.5
4,122,337	-				-1.5
4,122,337	-				-2.7
4,122,360	+				-2.5
4,122,361	-				-1.6
4,122,590	-				-0.4
4,122,607	-				+0.6
4,122,690	+		CA265_RS16395	0.13	+0.1
4,122,718	+		CA265_RS16395	0.18	-0.7
4,122,748	+		CA265_RS16395	0.23	+0.3
4,122,749	-		CA265_RS16395	0.23	+0.2
4,122,835	-		CA265_RS16395	0.38	-0.2
4,122,903	-		CA265_RS16395	0.50	+0.4
4,122,954	+		CA265_RS16395	0.59	+0.2
4,122,955	-		CA265_RS16395	0.59	+0.2
4,122,959	+		CA265_RS16395	0.60	+0.2
4,122,959	+		CA265_RS16395	0.60	+0.7
4,122,960	-		CA265_RS16395	0.60	+0.2
4,122,960	-		CA265_RS16395	0.60	+0.8
4,123,007	-		CA265_RS16395	0.68	-0.2
4,123,009	-		CA265_RS16395	0.68	-0.3
4,123,009	-		CA265_RS16395	0.68	-0.5
4,123,119	+		CA265_RS16395	0.87	-0.0
4,123,125	-		CA265_RS16395	0.88	+0.8
4,123,133	-		CA265_RS16395	0.90	+0.2
4,123,174	+				+0.1
4,123,174	+				-0.4
4,123,174	+				+0.1
4,123,176	+				-0.1
4,123,177	-				-1.0
4,123,201	+				-0.0
4,123,201	+				+0.4
4,123,201	+				-2.3
4,123,202	-				+0.2
4,123,247	+				-0.4
4,123,248	-				+0.9
4,123,251	+				-0.7
4,123,305	+				-0.7
4,123,316	-				-0.1
4,123,380	+				-0.0