Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16020

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,018,836	-				+0.0
4,018,886	-				-0.4
4,018,915	+				-1.2
4,018,919	+				+0.5
4,018,921	+				-0.1
4,018,986	+				-1.6
4,018,986	+				+0.1
4,018,987	-				-0.3
4,018,989	+				+0.0
4,018,990	-				-0.7
4,018,990	-				-2.0
4,018,992	-				+0.6
4,019,009	+				+0.1
4,019,018	-				-3.0
4,019,021	+				-0.1
4,019,021	+				-0.5
4,019,051	+				+0.0
4,019,132	+		CA265_RS16015	0.14	-0.8
4,019,132	+		CA265_RS16015	0.14	-1.6
4,019,132	+		CA265_RS16015	0.14	+0.4
4,019,132	+		CA265_RS16015	0.14	-0.3
4,019,142	+		CA265_RS16015	0.16	-0.7
4,019,142	+		CA265_RS16015	0.16	-1.6
4,019,151	+		CA265_RS16015	0.17	-0.7
4,019,152	-		CA265_RS16015	0.17	+0.5
4,019,245	+		CA265_RS16015	0.30	-3.1
4,019,273	-		CA265_RS16015	0.33	-1.6
4,019,273	-		CA265_RS16015	0.33	-3.4
4,019,274	+		CA265_RS16015	0.34	-0.6
4,019,297	-		CA265_RS16015	0.37	-1.6
4,019,307	+		CA265_RS16015	0.38	-0.3
4,019,389	+		CA265_RS16015	0.49	+0.3
4,019,396	-		CA265_RS16015	0.50	-1.2
4,019,398	-		CA265_RS16015	0.50	-0.7
4,019,398	-		CA265_RS16015	0.50	-1.7
4,019,412	-		CA265_RS16015	0.52	-0.0
4,019,431	+		CA265_RS16015	0.55	-0.9
4,019,474	-		CA265_RS16015	0.61	-1.4
4,019,482	-		CA265_RS16015	0.62	+1.4
4,019,482	-		CA265_RS16015	0.62	-1.1
4,019,485	+		CA265_RS16015	0.62	-1.7
4,019,501	-		CA265_RS16015	0.64	-0.5
4,019,513	-		CA265_RS16015	0.66	-1.2
4,019,552	-		CA265_RS16015	0.71	-0.6
4,019,575	+		CA265_RS16015	0.75	-1.2
4,019,607	+		CA265_RS16015	0.79	-1.2
4,019,651	+		CA265_RS16015	0.85	-1.4
4,019,670	+		CA265_RS16015	0.87	-2.3
4,019,708	-				-2.3
4,019,713	+				-1.6
4,019,713	+				-1.0
4,019,714	-				-3.0
4,019,740	-				-1.4
4,019,778	+				+0.1
4,019,782	+				-2.0
4,019,808	-				-1.3
4,019,810	+				-1.1
4,019,810	+				-0.8
4,019,810	+				+0.2
4,019,853	-		CA265_RS16020	0.12	-1.2
4,019,856	+		CA265_RS16020	0.13	-1.9
4,019,857	-		CA265_RS16020	0.13	-1.7
4,019,888	+		CA265_RS16020	0.17	-0.9
4,019,898	+		CA265_RS16020	0.18	+0.4
4,019,899	-		CA265_RS16020	0.18	-0.7
4,019,899	-		CA265_RS16020	0.18	-0.8
4,019,938	+		CA265_RS16020	0.24	+0.1
4,020,008	+		CA265_RS16020	0.33	-1.7
4,020,037	-		CA265_RS16020	0.37	-0.4
4,020,037	-		CA265_RS16020	0.37	-0.2
4,020,072	+		CA265_RS16020	0.41	-1.5
4,020,073	-		CA265_RS16020	0.41	-0.8
4,020,073	-		CA265_RS16020	0.41	-0.0
4,020,173	+		CA265_RS16020	0.55	-1.2
4,020,233	-		CA265_RS16020	0.63	+0.2
4,020,334	-		CA265_RS16020	0.76	-0.9
4,020,351	+		CA265_RS16020	0.78	-0.8
4,020,351	+		CA265_RS16020	0.78	-1.7
4,020,352	-		CA265_RS16020	0.78	-0.7
4,020,352	-		CA265_RS16020	0.78	-1.2
4,020,380	-		CA265_RS16020	0.82	-1.0
4,020,441	+				-1.8
4,020,531	+				-0.5
4,020,699	+		CA265_RS16025	0.68	-0.7
4,020,699	+		CA265_RS16025	0.68	-0.3
4,020,723	-		CA265_RS16025	0.78	+0.7
4,020,769	-				+0.4
4,020,770	+				-0.7
4,020,774	+				-0.1
4,020,775	-				+0.0
4,020,775	-				+0.2
4,020,775	-				+0.1
4,020,793	+				-0.4
4,020,799	+				-1.0
4,020,827	-		CA265_RS16030	0.13	+0.3
4,020,841	-		CA265_RS16030	0.17	+0.9
4,020,849	+		CA265_RS16030	0.19	-0.4
4,020,850	-		CA265_RS16030	0.19	+0.7
4,020,878	-		CA265_RS16030	0.27	+0.5
4,020,885	+		CA265_RS16030	0.28	-0.2
4,020,927	+		CA265_RS16030	0.39	-0.1
4,020,937	-		CA265_RS16030	0.42	+0.1
4,020,965	+		CA265_RS16030	0.49	+0.4
4,020,965	+		CA265_RS16030	0.49	-0.9
4,020,965	+		CA265_RS16030	0.49	-0.6
4,020,966	-		CA265_RS16030	0.49	+0.7
4,020,966	-		CA265_RS16030	0.49	-0.3
4,021,005	+		CA265_RS16030	0.60	-0.4
4,021,006	-		CA265_RS16030	0.60	+0.2
4,021,028	+		CA265_RS16030	0.66	-0.1
4,021,028	+		CA265_RS16030	0.66	+0.2
4,021,033	-		CA265_RS16030	0.67	+0.6
4,021,096	+		CA265_RS16030	0.83	+0.7
4,021,111	-		CA265_RS16030	0.87	-0.6
4,021,124	+				+0.2
4,021,125	-				+0.2
4,021,158	-				+0.2
4,021,161	+				+0.0
4,021,174	+				-0.3
4,021,175	-				-0.0
4,021,175	-				+0.0
4,021,253	-		CA265_RS16035	0.10	-0.8
4,021,328	+		CA265_RS16035	0.19	+0.5
4,021,352	+		CA265_RS16035	0.21	+0.2
4,021,405	+		CA265_RS16035	0.27	-0.4
4,021,405	+		CA265_RS16035	0.27	+0.4
4,021,406	-		CA265_RS16035	0.27	+0.5
4,021,413	-		CA265_RS16035	0.28	+0.7
4,021,433	+		CA265_RS16035	0.30	+0.3
4,021,434	-		CA265_RS16035	0.31	+0.5
4,021,444	+		CA265_RS16035	0.32	+0.1
4,021,451	-		CA265_RS16035	0.33	+0.0
4,021,468	+		CA265_RS16035	0.34	-0.5
4,021,493	-		CA265_RS16035	0.37	+0.4