Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16015

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
4,018,050	-		CA265_RS16005	0.79	+0.5
4,018,079	+		CA265_RS16005	0.83	+0.8
4,018,079	+		CA265_RS16005	0.83	+0.6
4,018,080	-		CA265_RS16005	0.83	+0.9
4,018,102	-		CA265_RS16005	0.86	-0.7
4,018,225	-				+0.5
4,018,395	+		CA265_RS16010	0.30	+0.0
4,018,395	+		CA265_RS16010	0.30	+0.7
4,018,403	+		CA265_RS16010	0.31	+0.9
4,018,403	+		CA265_RS16010	0.31	+0.1
4,018,489	-		CA265_RS16010	0.43	+0.5
4,018,540	+		CA265_RS16010	0.51	+0.3
4,018,541	-		CA265_RS16010	0.51	-0.3
4,018,560	+		CA265_RS16010	0.53	+0.1
4,018,561	-				-0.6
4,018,614	+		CA265_RS16010	0.61	-0.0
4,018,615	-		CA265_RS16010	0.61	-0.6
4,018,662	+		CA265_RS16010	0.68	+0.4
4,018,749	+		CA265_RS16010	0.81	-0.2
4,018,750	-		CA265_RS16010	0.81	-0.4
4,018,836	-				+0.0
4,018,886	-				-0.4
4,018,915	+				-1.2
4,018,919	+				+0.5
4,018,921	+				-0.1
4,018,986	+				-1.6
4,018,986	+				+0.1
4,018,987	-				-0.3
4,018,989	+				+0.0
4,018,990	-				-0.7
4,018,990	-				-2.0
4,018,992	-				+0.6
4,019,009	+				+0.1
4,019,018	-				-3.0
4,019,021	+				-0.1
4,019,021	+				-0.5
4,019,051	+				+0.0
4,019,132	+		CA265_RS16015	0.14	-0.8
4,019,132	+		CA265_RS16015	0.14	-1.6
4,019,132	+		CA265_RS16015	0.14	+0.4
4,019,132	+		CA265_RS16015	0.14	-0.3
4,019,142	+		CA265_RS16015	0.16	-0.7
4,019,142	+		CA265_RS16015	0.16	-1.6
4,019,151	+		CA265_RS16015	0.17	-0.7
4,019,152	-		CA265_RS16015	0.17	+0.5
4,019,245	+		CA265_RS16015	0.30	-3.1
4,019,273	-		CA265_RS16015	0.33	-1.6
4,019,273	-		CA265_RS16015	0.33	-3.4
4,019,274	+		CA265_RS16015	0.34	-0.6
4,019,297	-		CA265_RS16015	0.37	-1.6
4,019,307	+		CA265_RS16015	0.38	-0.3
4,019,389	+		CA265_RS16015	0.49	+0.3
4,019,396	-		CA265_RS16015	0.50	-1.2
4,019,398	-		CA265_RS16015	0.50	-0.7
4,019,398	-		CA265_RS16015	0.50	-1.7
4,019,412	-		CA265_RS16015	0.52	-0.0
4,019,431	+		CA265_RS16015	0.55	-0.9
4,019,474	-		CA265_RS16015	0.61	-1.4
4,019,482	-		CA265_RS16015	0.62	+1.4
4,019,482	-		CA265_RS16015	0.62	-1.1
4,019,485	+		CA265_RS16015	0.62	-1.7
4,019,501	-		CA265_RS16015	0.64	-0.5
4,019,513	-		CA265_RS16015	0.66	-1.2
4,019,552	-		CA265_RS16015	0.71	-0.6
4,019,575	+		CA265_RS16015	0.75	-1.2
4,019,607	+		CA265_RS16015	0.79	-1.2
4,019,651	+		CA265_RS16015	0.85	-1.4
4,019,670	+		CA265_RS16015	0.87	-2.3
4,019,708	-				-2.3
4,019,713	+				-1.6
4,019,713	+				-1.0
4,019,714	-				-3.0
4,019,740	-				-1.4
4,019,778	+				+0.1
4,019,782	+				-2.0
4,019,808	-				-1.3
4,019,810	+				-1.1
4,019,810	+				-0.8
4,019,810	+				+0.2
4,019,853	-		CA265_RS16020	0.12	-1.2
4,019,856	+		CA265_RS16020	0.13	-1.9
4,019,857	-		CA265_RS16020	0.13	-1.7
4,019,888	+		CA265_RS16020	0.17	-0.9
4,019,898	+		CA265_RS16020	0.18	+0.4
4,019,899	-		CA265_RS16020	0.18	-0.7
4,019,899	-		CA265_RS16020	0.18	-0.8
4,019,938	+		CA265_RS16020	0.24	+0.1
4,020,008	+		CA265_RS16020	0.33	-1.7
4,020,037	-		CA265_RS16020	0.37	-0.4
4,020,037	-		CA265_RS16020	0.37	-0.2
4,020,072	+		CA265_RS16020	0.41	-1.5
4,020,073	-		CA265_RS16020	0.41	-0.8
4,020,073	-		CA265_RS16020	0.41	-0.0
4,020,173	+		CA265_RS16020	0.55	-1.2
4,020,233	-		CA265_RS16020	0.63	+0.2
4,020,334	-		CA265_RS16020	0.76	-0.9
4,020,351	+		CA265_RS16020	0.78	-0.8
4,020,351	+		CA265_RS16020	0.78	-1.7
4,020,352	-		CA265_RS16020	0.78	-0.7
4,020,352	-		CA265_RS16020	0.78	-1.2
4,020,380	-		CA265_RS16020	0.82	-1.0
4,020,441	+				-1.8
4,020,531	+				-0.5
4,020,699	+		CA265_RS16025	0.68	-0.7
4,020,699	+		CA265_RS16025	0.68	-0.3
4,020,723	-		CA265_RS16025	0.78	+0.7