Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15855

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
3,987,672	+		CA265_RS15850	0.21	-1.8
3,987,687	-		CA265_RS15850	0.23	-1.0
3,987,687	-		CA265_RS15850	0.23	+0.2
3,987,743	-		CA265_RS15850	0.28	-0.6
3,987,897	-		CA265_RS15850	0.42	-0.8
3,987,928	-		CA265_RS15850	0.45	+0.2
3,987,951	-		CA265_RS15850	0.47	+0.8
3,987,978	-		CA265_RS15850	0.49	-0.5
3,987,989	-		CA265_RS15850	0.50	+0.0
3,988,002	-		CA265_RS15850	0.52	+0.0
3,988,215	-		CA265_RS15850	0.71	-0.2
3,988,320	-		CA265_RS15850	0.81	-0.3
3,988,320	-		CA265_RS15850	0.81	-0.1
3,988,336	+		CA265_RS15850	0.82	+1.4
3,988,343	-		CA265_RS15850	0.83	-0.4
3,988,389	-		CA265_RS15850	0.87	+0.2
3,988,430	+				-1.0
3,988,431	-				-0.5
3,988,446	-				+0.1
3,988,567	-				-0.7
3,988,616	+				+0.7
3,988,617	-				-0.3
3,988,721	+		CA265_RS15855	0.16	-0.9
3,988,722	-		CA265_RS15855	0.16	-0.8
3,988,725	-		CA265_RS15855	0.16	-0.5
3,988,755	-		CA265_RS15855	0.19	-0.1
3,988,812	-		CA265_RS15855	0.23	-0.8
3,988,930	+		CA265_RS15855	0.34	-0.0
3,989,109	-		CA265_RS15855	0.49	-1.3
3,989,223	-		CA265_RS15855	0.59	-0.2
3,989,263	-		CA265_RS15855	0.62	-0.7
3,989,379	+		CA265_RS15855	0.72	-0.9
3,989,379	+		CA265_RS15855	0.72	-0.9
3,989,431	-		CA265_RS15855	0.77	-0.7
3,989,520	+		CA265_RS15855	0.84	-0.1
3,989,521	-		CA265_RS15855	0.84	+0.7
3,989,567	+		CA265_RS15855	0.88	-0.9
3,989,583	+		CA265_RS15855	0.90	-0.6
3,989,604	-				+0.2
3,989,615	-				+0.2
3,989,615	-				-0.3
3,989,617	-				+0.1
3,989,654	+				-0.2
3,989,654	+				+0.8
3,989,655	-				+0.4
3,989,890	+				-0.9
3,989,891	-				-0.5
3,989,891	-				-0.4
3,989,891	-				-0.1
3,989,923	+				+0.1
3,989,923	+				-0.4
3,989,962	+				-1.4
3,989,970	+				-0.4
3,989,977	-				-0.2
3,989,991	+				-1.1
3,989,991	+				-0.8
3,990,024	-				-0.1
3,990,057	+				-1.4
3,990,079	+				+0.2
3,990,079	+				-0.8
3,990,079	+				-1.2
3,990,079	+				+0.4
3,990,090	+				-0.7
3,990,091	-				-0.6
3,990,095	-				+0.4
3,990,098	+		CA265_RS15860	0.10	-0.0
3,990,259	-		CA265_RS15860	0.23	-0.4
3,990,274	-		CA265_RS15860	0.24	-0.0
3,990,304	-		CA265_RS15860	0.27	-1.1
3,990,348	-		CA265_RS15860	0.30	+0.1
3,990,391	+		CA265_RS15860	0.34	-0.7
3,990,393	+		CA265_RS15860	0.34	-0.6
3,990,394	-		CA265_RS15860	0.34	+0.0
3,990,470	+		CA265_RS15860	0.40	+0.3
3,990,470	+		CA265_RS15860	0.40	+1.0
3,990,502	-		CA265_RS15860	0.42	+0.1
3,990,546	-		CA265_RS15860	0.46	+0.2
3,990,553	+		CA265_RS15860	0.47	-0.5
3,990,554	-		CA265_RS15860	0.47	+0.3
3,990,556	-		CA265_RS15860	0.47	+0.3
3,990,556	-		CA265_RS15860	0.47	+0.7