Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15330

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
3,858,575	-				-1.5
3,858,579	-				+1.0
3,858,605	+				-0.4
3,858,639	+				+0.4
3,858,639	+				+0.4
3,858,640	-				+0.0
3,858,710	+		CA265_RS15325	0.11	-0.7
3,858,710	+		CA265_RS15325	0.11	-1.3
3,858,711	-		CA265_RS15325	0.11	+1.4
3,858,731	-		CA265_RS15325	0.14	+0.2
3,858,735	-		CA265_RS15325	0.14	-0.8
3,858,738	-		CA265_RS15325	0.15	-1.2
3,858,844	-		CA265_RS15325	0.28	+0.1
3,858,877	-		CA265_RS15325	0.33	-0.0
3,858,877	-		CA265_RS15325	0.33	-2.1
3,858,896	-		CA265_RS15325	0.35	+0.1
3,858,896	-		CA265_RS15325	0.35	+1.0
3,859,051	+		CA265_RS15325	0.55	+1.8
3,859,051	+		CA265_RS15325	0.55	-0.2
3,859,058	+		CA265_RS15325	0.56	+0.2
3,859,077	+		CA265_RS15325	0.58	-0.9
3,859,077	+		CA265_RS15325	0.58	+0.4
3,859,077	+		CA265_RS15325	0.58	-0.5
3,859,079	+		CA265_RS15325	0.58	-3.3
3,859,079	+		CA265_RS15325	0.58	-0.2
3,859,079	+		CA265_RS15325	0.58	-0.6
3,859,080	-		CA265_RS15325	0.59	+0.5
3,859,080	-		CA265_RS15325	0.59	-0.2
3,859,126	-		CA265_RS15325	0.64	+0.1
3,859,141	+		CA265_RS15325	0.66	-0.1
3,859,193	-		CA265_RS15325	0.73	-1.5
3,859,408	+				-0.8
3,859,409	-				-0.2
3,859,468	+				-0.6
3,859,472	+				+0.8
3,859,473	-				-0.6
3,859,502	-				+0.0
3,859,566	-				+0.1
3,859,673	-		CA265_RS15330	0.15	-1.6
3,859,776	+		CA265_RS15330	0.29	-0.8
3,859,887	+		CA265_RS15330	0.44	-2.4
3,859,888	-		CA265_RS15330	0.44	+1.4
3,859,955	+		CA265_RS15330	0.54	-2.0
3,859,960	-		CA265_RS15330	0.54	-2.2
3,860,057	+		CA265_RS15330	0.68	-1.4
3,860,057	+		CA265_RS15330	0.68	-1.6
3,860,088	+		CA265_RS15330	0.72	-1.7
3,860,310	+				-0.2
3,860,323	-				-0.6
3,860,365	-				-0.2
3,860,448	+				-0.4
3,860,448	+				-0.1
3,860,449	-				-0.6
3,860,521	+		CA265_RS15335	0.16	-0.3
3,860,534	-		CA265_RS15335	0.18	-0.2
3,860,665	+		CA265_RS15335	0.32	+1.6
3,860,666	-		CA265_RS15335	0.32	+0.2
3,860,667	+		CA265_RS15335	0.32	+0.6
3,860,667	+		CA265_RS15335	0.32	+0.3
3,860,668	-		CA265_RS15335	0.32	+0.2
3,860,696	+		CA265_RS15335	0.35	-0.0
3,860,751	+		CA265_RS15335	0.41	+0.4
3,860,792	+		CA265_RS15335	0.45	+0.2
3,860,792	+		CA265_RS15335	0.45	+0.0
3,860,813	-		CA265_RS15335	0.47	-1.1
3,860,839	+		CA265_RS15335	0.50	-0.8
3,860,841	+		CA265_RS15335	0.50	+1.0
3,860,842	-		CA265_RS15335	0.50	+0.1
3,860,842	-		CA265_RS15335	0.50	-2.0
3,860,844	+		CA265_RS15335	0.51	-1.5
3,860,920	+		CA265_RS15335	0.59	-0.4
3,860,921	-		CA265_RS15335	0.59	-0.6
3,860,948	+		CA265_RS15335	0.62	-0.1
3,860,956	+		CA265_RS15335	0.62	+0.8
3,860,972	+		CA265_RS15335	0.64	-0.8
3,860,986	+		CA265_RS15335	0.66	-0.8
3,860,999	+		CA265_RS15335	0.67	+0.0
3,861,018	-		CA265_RS15335	0.69	-0.4
3,861,033	-		CA265_RS15335	0.71	-0.2
3,861,086	+		CA265_RS15335	0.76	+0.2
3,861,111	+		CA265_RS15335	0.79	-0.1
3,861,112	-		CA265_RS15335	0.79	-1.6
3,861,125	-		CA265_RS15335	0.80	+0.3
3,861,189	+		CA265_RS15335	0.87	+0.2
3,861,203	+		CA265_RS15335	0.89	-1.4
3,861,219	-				-0.2
3,861,237	-				-0.6
3,861,245	+				-0.1