Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15045

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
3,789,641	-		CA265_RS15030	0.90	-0.6
3,789,641	-		CA265_RS15030	0.90	+0.9
3,789,663	+				+0.3
3,789,740	+		CA265_RS15035	0.27	+0.4
3,789,839	+		CA265_RS15035	0.71	+0.4
3,789,991	+				+0.8
3,790,133	+		CA265_RS15040	0.16	-0.3
3,790,157	-		CA265_RS15040	0.21	-0.0
3,790,160	-		CA265_RS15040	0.22	-1.6
3,790,160	-		CA265_RS15040	0.22	+0.2
3,790,225	+		CA265_RS15040	0.36	-0.4
3,790,225	+		CA265_RS15040	0.36	+0.5
3,790,227	+		CA265_RS15040	0.37	+0.4
3,790,267	+		CA265_RS15040	0.45	-0.9
3,790,293	+		CA265_RS15040	0.51	-0.2
3,790,320	-		CA265_RS15040	0.57	-0.3
3,790,361	+		CA265_RS15040	0.66	+0.2
3,790,385	+		CA265_RS15040	0.71	-1.0
3,790,388	-		CA265_RS15040	0.72	+1.3
3,790,388	-		CA265_RS15040	0.72	+0.3
3,790,400	+		CA265_RS15040	0.74	-0.5
3,790,485	-				-1.4
3,790,489	-				-0.7
3,790,620	+				-0.7
3,790,621	-				+0.0
3,790,621	-				+0.0
3,790,670	+				-0.3
3,790,670	+				-0.7
3,790,697	+				-0.5
3,790,773	+		CA265_RS15045	0.12	-1.0
3,790,851	+		CA265_RS15045	0.17	-0.7
3,790,851	+		CA265_RS15045	0.17	-1.2
3,790,851	+		CA265_RS15045	0.17	+0.0
3,790,851	+		CA265_RS15045	0.17	-0.4
3,790,851	+		CA265_RS15045	0.17	-0.7
3,790,852	-		CA265_RS15045	0.17	-1.7
3,790,852	-		CA265_RS15045	0.17	-1.8
3,790,861	+		CA265_RS15045	0.17	-0.5
3,790,907	-		CA265_RS15045	0.20	-1.6
3,790,927	+		CA265_RS15045	0.21	-3.3
3,790,937	-		CA265_RS15045	0.22	-2.1
3,791,010	+		CA265_RS15045	0.27	-1.7
3,791,027	+		CA265_RS15045	0.28	-1.1
3,791,028	-		CA265_RS15045	0.28	+0.3
3,791,028	-		CA265_RS15045	0.28	-0.3
3,791,029	+		CA265_RS15045	0.28	+0.2
3,791,069	-		CA265_RS15045	0.30	-2.3
3,791,074	-		CA265_RS15045	0.31	-1.3
3,791,175	+		CA265_RS15045	0.37	-1.0
3,791,188	+		CA265_RS15045	0.38	-0.8
3,791,189	-		CA265_RS15045	0.38	-0.1
3,791,271	+		CA265_RS15045	0.43	-1.3
3,791,272	-		CA265_RS15045	0.43	-2.7
3,791,275	+		CA265_RS15045	0.43	-0.0
3,791,276	-		CA265_RS15045	0.43	-0.5
3,791,276	-		CA265_RS15045	0.43	-0.9
3,791,287	+		CA265_RS15045	0.44	+0.9
3,791,296	-		CA265_RS15045	0.44	-0.7
3,791,310	+		CA265_RS15045	0.45	-0.5
3,791,311	-		CA265_RS15045	0.45	-1.2
3,791,350	-		CA265_RS15045	0.48	-0.6
3,791,418	-		CA265_RS15045	0.52	-0.9
3,791,427	+		CA265_RS15045	0.53	-0.4
3,791,427	+		CA265_RS15045	0.53	-1.3
3,791,428	-		CA265_RS15045	0.53	-0.3
3,791,514	+		CA265_RS15045	0.58	-0.3
3,791,569	+		CA265_RS15045	0.61	-1.2
3,791,599	+		CA265_RS15045	0.63	-1.1
3,791,914	-		CA265_RS15045	0.83	-0.5
3,791,914	-		CA265_RS15045	0.83	+0.7
3,791,928	+		CA265_RS15045	0.84	-1.2
3,791,947	+		CA265_RS15045	0.85	-0.8
3,791,962	-		CA265_RS15045	0.86	-1.1
3,791,991	-		CA265_RS15045	0.88	-0.2
3,792,140	-				+0.2
3,792,141	+				-0.8
3,792,148	-				+0.9
3,792,148	-				-0.8
3,792,151	+				-0.1
3,792,288	+				+0.2
3,792,289	-				-0.6
3,792,325	+				-0.3
3,792,325	+				-1.7
3,792,326	-				-0.4
3,792,363	+				-0.3
3,792,379	-				-0.1
3,792,431	+		CA265_RS15050	0.15	+0.0
3,792,461	+		CA265_RS15050	0.19	-0.3
3,792,534	+		CA265_RS15050	0.31	-0.4
3,792,535	-		CA265_RS15050	0.31	+0.4
3,792,553	+		CA265_RS15050	0.34	+0.2
3,792,553	+		CA265_RS15050	0.34	-0.1
3,792,553	+		CA265_RS15050	0.34	-0.8
3,792,554	-		CA265_RS15050	0.34	+0.1
3,792,554	-		CA265_RS15050	0.34	-1.5
3,792,557	+		CA265_RS15050	0.35	+0.1
3,792,558	-		CA265_RS15050	0.35	-0.4
3,792,590	+		CA265_RS15050	0.40	+1.5
3,792,591	-		CA265_RS15050	0.40	-0.1
3,792,596	+		CA265_RS15050	0.41	+1.3
3,792,596	+		CA265_RS15050	0.41	+0.0
3,792,596	+		CA265_RS15050	0.41	+0.1
3,792,598	+		CA265_RS15050	0.41	+0.5
3,792,598	+		CA265_RS15050	0.41	+0.3
3,792,598	+		CA265_RS15050	0.41	-0.3
3,792,599	-		CA265_RS15050	0.41	+0.2
3,792,599	-		CA265_RS15050	0.41	-0.7
3,792,633	+		CA265_RS15050	0.47	+0.3
3,792,675	-		CA265_RS15050	0.53	-0.7
3,792,732	-		CA265_RS15050	0.63	-0.7
3,792,740	+		CA265_RS15050	0.64	-0.8
3,792,816	+		CA265_RS15050	0.76	+0.1
3,792,838	+		CA265_RS15050	0.79	+0.2
3,792,847	-		CA265_RS15050	0.81	+0.1
3,792,864	-		CA265_RS15050	0.84	-0.3
3,792,879	+		CA265_RS15050	0.86	-0.4
3,792,939	+				+0.4
3,792,987	-				+0.0
3,793,027	-				-0.6
3,793,133	+				+0.0
3,793,134	-				+0.3