Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13960

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
3,513,504	-		CA265_RS13955	0.59	+0.1
3,513,527	+		CA265_RS13955	0.60	-0.1
3,513,550	+		CA265_RS13955	0.61	+0.0
3,513,550	+		CA265_RS13955	0.61	+0.4
3,513,551	-		CA265_RS13955	0.61	-0.1
3,513,553	-		CA265_RS13955	0.61	-0.2
3,513,573	+		CA265_RS13955	0.62	-0.8
3,513,573	+		CA265_RS13955	0.62	+0.1
3,513,573	+		CA265_RS13955	0.62	-0.4
3,513,573	+		CA265_RS13955	0.62	-0.0
3,513,574	-		CA265_RS13955	0.62	-0.1
3,513,630	+		CA265_RS13955	0.65	-0.2
3,513,631	-		CA265_RS13955	0.65	+0.2
3,513,691	-		CA265_RS13955	0.67	+0.0
3,513,697	-		CA265_RS13955	0.68	-0.4
3,513,730	-		CA265_RS13955	0.69	+0.5
3,513,753	-		CA265_RS13955	0.70	-0.2
3,513,768	+		CA265_RS13955	0.71	-0.5
3,513,769	-		CA265_RS13955	0.71	-0.3
3,513,788	+		CA265_RS13955	0.72	-0.4
3,513,823	+		CA265_RS13955	0.73	+1.2
3,513,824	-		CA265_RS13955	0.73	-0.1
3,513,862	+		CA265_RS13955	0.75	+0.3
3,513,867	+		CA265_RS13955	0.75	-0.2
3,513,868	-		CA265_RS13955	0.75	-0.3
3,513,868	-		CA265_RS13955	0.75	+0.5
3,513,868	-		CA265_RS13955	0.75	+0.2
3,514,023	+		CA265_RS13955	0.82	+0.9
3,514,056	+		CA265_RS13955	0.83	+0.2
3,514,146	+		CA265_RS13955	0.87	-0.3
3,514,147	-		CA265_RS13955	0.87	+0.6
3,514,167	-		CA265_RS13955	0.88	-0.2
3,514,178	-		CA265_RS13955	0.89	-1.3
3,514,179	+		CA265_RS13955	0.89	+0.3
3,514,221	-				-0.1
3,514,234	-				-0.3
3,514,266	-				-1.6
3,514,321	+				+0.7
3,514,356	+				+0.0
3,514,361	+				+0.7
3,514,364	-				+2.2
3,514,391	+				-0.4
3,514,394	+				-0.6
3,514,408	+				+0.5
3,514,451	-				-0.9
3,514,471	+				-0.5
3,514,547	+		CA265_RS13960	0.21	-1.0
3,514,560	-		CA265_RS13960	0.23	-1.0
3,514,611	-		CA265_RS13960	0.33	-1.3
3,514,632	-		CA265_RS13960	0.37	-0.6
3,514,685	+		CA265_RS13960	0.47	-1.0
3,514,700	-		CA265_RS13960	0.50	-0.9
3,514,703	+		CA265_RS13960	0.50	-0.6
3,514,703	+		CA265_RS13960	0.50	-1.2
3,514,706	+		CA265_RS13960	0.51	+0.6
3,514,707	-		CA265_RS13960	0.51	-0.7
3,514,746	+		CA265_RS13960	0.58	-0.4
3,514,746	+		CA265_RS13960	0.58	-0.5
3,514,747	-		CA265_RS13960	0.58	+0.1
3,514,747	-		CA265_RS13960	0.58	-0.6
3,514,753	-		CA265_RS13960	0.60	-0.7
3,514,791	-		CA265_RS13960	0.67	-1.1
3,514,904	+		CA265_RS13960	0.88	+0.1
3,514,923	-				-0.3
3,514,971	-				-1.1
3,515,073	+				+1.2
3,515,222	+				-0.5
3,515,222	+				-0.2
3,515,225	+				-0.1
3,515,235	-				-1.6
3,515,245	-				-0.0
3,515,271	+				+0.4
3,515,373	+				-1.3
3,515,484	-				+0.3
3,515,578	+				+0.3
3,515,585	-				+0.2
3,515,672	-				-0.5
3,515,737	+				+0.2
3,515,737	+				-0.3
3,515,737	+				-0.4
3,515,738	-				-0.1
3,515,738	-				-0.7
3,515,790	+				-0.7
3,515,802	+				+0.3
3,515,856	-				-0.4
3,515,870	-				+0.0
3,515,870	-				-0.3