Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12940

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
3,221,772	-		CA265_RS12935	0.75	-0.9
3,221,781	-		CA265_RS12935	0.76	+0.8
3,221,846	+		CA265_RS12935	0.82	-0.3
3,221,870	-		CA265_RS12935	0.85	-0.6
3,221,883	-		CA265_RS12935	0.86	+0.4
3,221,883	-		CA265_RS12935	0.86	-0.2
3,221,994	+				-0.4
3,222,010	-				-0.0
3,222,010	-				-0.1
3,222,091	-				-0.0
3,222,147	+				-0.2
3,222,148	-				+0.7
3,222,187	+				+0.3
3,222,279	+				-0.2
3,222,282	-				-0.2
3,222,284	+				-0.5
3,222,309	+				+0.2
3,222,359	-				+0.6
3,222,394	+				-0.4
3,222,397	-				+0.6
3,222,575	+				-0.2
3,222,575	+				+0.3
3,222,608	-				-0.2
3,222,631	-				-1.2
3,222,635	+				-1.0
3,222,721	+		CA265_RS12940	0.11	-0.8
3,222,722	-		CA265_RS12940	0.11	-1.1
3,222,722	-		CA265_RS12940	0.11	-2.6
3,222,887	-		CA265_RS12940	0.23	-1.2
3,223,025	+		CA265_RS12940	0.33	-0.5
3,223,221	+		CA265_RS12940	0.47	-0.6
3,223,221	+				+0.8
3,223,222	-		CA265_RS12940	0.47	-1.5
3,223,349	+		CA265_RS12940	0.57	-1.6
3,223,562	-		CA265_RS12940	0.72	+0.8
3,223,569	+		CA265_RS12940	0.73	-0.2
3,223,648	-		CA265_RS12940	0.78	+1.8
3,223,648	-		CA265_RS12940	0.78	-1.3
3,223,695	-		CA265_RS12940	0.82	+0.1
3,223,695	-		CA265_RS12940	0.82	-0.1
3,223,747	-		CA265_RS12940	0.86	+1.2
3,223,814	+				-1.6
3,223,815	-				-1.0
3,223,815	-				-1.5
3,224,010	+				-0.2
3,224,054	-				-0.4
3,224,054	-				+0.1
3,224,093	+				+0.0
3,224,180	+				-0.0
3,224,338	+				-0.2
3,224,339	-				-0.7
3,224,362	-		CA265_RS12945	0.12	-0.2
3,224,362	-		CA265_RS12945	0.12	+0.8
3,224,380	+		CA265_RS12945	0.14	+0.9
3,224,470	-		CA265_RS12945	0.23	+0.5
3,224,493	-		CA265_RS12945	0.25	+0.5
3,224,504	+		CA265_RS12945	0.26	+1.7
3,224,506	+		CA265_RS12945	0.27	+0.2
3,224,562	-		CA265_RS12945	0.32	+0.5
3,224,595	-		CA265_RS12945	0.36	-1.8
3,224,630	+		CA265_RS12945	0.39	+0.3
3,224,631	-		CA265_RS12945	0.39	+0.4
3,224,706	-		CA265_RS12945	0.47	+0.5
3,224,753	-		CA265_RS12945	0.52	-0.2
3,224,753	-		CA265_RS12945	0.52	+1.5
3,224,756	+		CA265_RS12945	0.52	+0.7
3,224,756	+		CA265_RS12945	0.52	-0.2
3,224,795	-		CA265_RS12945	0.56	-0.0
3,224,807	+		CA265_RS12945	0.57	-0.3
3,224,807	+		CA265_RS12945	0.57	-0.0
3,224,860	-		CA265_RS12945	0.63	+0.5
3,224,860	-		CA265_RS12945	0.63	+0.1
3,224,894	+		CA265_RS12945	0.66	+0.3