Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10900

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,681,885	+				-0.3
2,681,886	-				+0.1
2,681,945	+				-0.1
2,681,956	+				-0.4
2,682,008	+		CA265_RS10895	0.12	+0.2
2,682,020	-		CA265_RS10895	0.13	-0.3
2,682,061	-		CA265_RS10895	0.20	-0.4
2,682,077	+		CA265_RS10895	0.22	-1.2
2,682,078	-		CA265_RS10895	0.22	+0.4
2,682,083	+		CA265_RS10895	0.23	-0.1
2,682,091	+		CA265_RS10895	0.24	-0.7
2,682,142	+		CA265_RS10895	0.32	-0.1
2,682,181	+		CA265_RS10895	0.38	+0.5
2,682,199	+		CA265_RS10895	0.40	-0.0
2,682,248	-		CA265_RS10895	0.48	+0.2
2,682,257	+		CA265_RS10895	0.49	+0.0
2,682,288	-		CA265_RS10895	0.54	-0.1
2,682,307	-		CA265_RS10895	0.56	-1.9
2,682,416	+		CA265_RS10895	0.73	-0.4
2,682,522	-		CA265_RS10895	0.89	+1.4
2,682,529	-		CA265_RS10895	0.90	+0.7
2,682,557	+				+0.1
2,682,621	-				-0.1
2,682,656	+				-0.4
2,682,708	+				+0.3
2,682,730	+				-0.9
2,682,761	+				-0.5
2,682,761	+				-0.0
2,682,790	-				-0.3
2,682,794	-				-0.9
2,682,879	+				-1.1
2,682,880	-				-0.1
2,682,959	-		CA265_RS10900	0.18	+0.4
2,682,978	-		CA265_RS10900	0.22	-0.9
2,682,995	-		CA265_RS10900	0.25	-0.2
2,683,151	+		CA265_RS10900	0.59	-1.6
2,683,172	+		CA265_RS10900	0.63	-0.8
2,683,195	+		CA265_RS10900	0.68	-0.7
2,683,196	-		CA265_RS10900	0.68	-0.5
2,683,197	+		CA265_RS10900	0.68	-0.8
2,683,198	-		CA265_RS10900	0.69	-0.6
2,683,198	-		CA265_RS10900	0.69	-1.2
2,683,331	+				-1.1
2,683,346	-				-0.2
2,683,501	+				+0.5
2,683,625	-		CA265_RS10905	0.23	+0.0
2,683,634	+		CA265_RS10905	0.24	+1.2
2,683,638	-		CA265_RS10905	0.25	-2.5
2,683,653	-		CA265_RS10905	0.27	+0.5
2,683,697	+		CA265_RS10905	0.34	-0.6
2,683,784	+		CA265_RS10905	0.47	+0.2
2,683,868	+		CA265_RS10905	0.60	+0.3
2,683,898	+		CA265_RS10905	0.64	+0.0
2,684,050	+		CA265_RS10905	0.87	-0.1
2,684,111	-				+0.3
2,684,151	-				-0.5
2,684,162	+				-1.8
2,684,166	+				+0.6
2,684,223	-				-2.0
2,684,237	-				-0.6
2,684,281	-				+0.2
2,684,297	+				-0.6
2,684,298	-				-1.0
2,684,339	+		CA265_RS10910	0.12	-0.6
2,684,340	-		CA265_RS10910	0.12	-0.8