Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10475

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,595,474	-		CA265_RS10470	0.42	-1.4
2,595,476	-		CA265_RS10470	0.43	-0.5
2,595,477	+		CA265_RS10470	0.43	-1.3
2,595,537	+		CA265_RS10470	0.47	-1.4
2,595,537	+		CA265_RS10470	0.47	-1.0
2,595,620	-		CA265_RS10470	0.52	-2.1
2,595,628	-		CA265_RS10470	0.53	-2.5
2,595,685	-		CA265_RS10470	0.57	-2.2
2,595,746	+				+1.1
2,595,746	+		CA265_RS10470	0.61	-2.5
2,595,747	-		CA265_RS10470	0.61	+0.4
2,595,747	-		CA265_RS10470	0.61	-0.9
2,595,761	-		CA265_RS10470	0.62	-1.2
2,595,827	+		CA265_RS10470	0.67	-1.1
2,595,829	+		CA265_RS10470	0.67	-1.7
2,595,830	-		CA265_RS10470	0.67	-0.4
2,595,902	-		CA265_RS10470	0.72	-1.2
2,595,902	-		CA265_RS10470	0.72	-0.7
2,595,902	-		CA265_RS10470	0.72	-3.3
2,595,992	-		CA265_RS10470	0.78	-1.9
2,595,992	-		CA265_RS10470	0.78	-2.5
2,596,150	-		CA265_RS10470	0.89	-0.4
2,596,159	-		CA265_RS10470	0.90	-2.5
2,596,194	+				-1.5
2,596,246	-				-1.3
2,596,290	+				-1.2
2,596,290	+				-1.5
2,596,291	-				-2.3
2,596,301	-				-1.0
2,596,323	+				+0.1
2,596,323	+				-0.7
2,596,324	-				-0.6
2,596,325	+				-0.7
2,596,355	+				-0.2
2,596,378	-				+0.8
2,596,392	-				-1.3
2,596,401	+				+0.1
2,596,402	-				-0.4
2,596,439	+				-0.4
2,596,440	-				-2.6
2,596,448	+				-0.9
2,596,624	+		CA265_RS10475	0.21	-1.6
2,596,625	-		CA265_RS10475	0.21	-0.5
2,596,647	-		CA265_RS10475	0.24	-1.1
2,596,792	+		CA265_RS10475	0.39	+0.3
2,596,843	+		CA265_RS10475	0.45	-1.8
2,596,847	-		CA265_RS10475	0.45	-1.2
2,596,869	+		CA265_RS10475	0.48	-1.0
2,596,879	+		CA265_RS10475	0.49	-1.3
2,596,980	+		CA265_RS10475	0.60	+0.1
2,597,070	-		CA265_RS10475	0.70	-1.0
2,597,070	-		CA265_RS10475	0.70	-2.1
2,597,081	-		CA265_RS10475	0.71	-0.6
2,597,081	-		CA265_RS10475	0.71	-1.0
2,597,081	-		CA265_RS10475	0.71	-0.7
2,597,150	-		CA265_RS10475	0.79	-2.1
2,597,158	-		CA265_RS10475	0.79	-0.3
2,597,179	+		CA265_RS10475	0.82	-0.5
2,597,260	-				-0.6
2,597,349	+				-2.7
2,597,365	-				+0.2
2,597,544	+		CA265_RS10480	0.48	+0.9
2,597,544	+		CA265_RS10480	0.48	-0.3
2,597,577	-		CA265_RS10480	0.58	-0.5
2,597,577	-		CA265_RS10480	0.58	+1.3
2,597,586	-		CA265_RS10480	0.61	+0.1
2,597,608	+		CA265_RS10480	0.68	-0.6
2,597,609	-		CA265_RS10480	0.68	-0.8
2,597,696	+				-0.1
2,597,696	+				+0.7
2,597,710	-				+0.1
2,597,715	+				-1.4
2,597,718	+				+0.0
2,597,801	-		CA265_RS10485	0.40	+0.2
2,597,812	-		CA265_RS10485	0.44	-1.1
2,597,832	+		CA265_RS10485	0.52	-0.3
2,597,833	-		CA265_RS10485	0.52	+0.5
2,597,892	+		CA265_RS10485	0.75	-0.7
2,597,893	-		CA265_RS10485	0.75	-0.5
2,597,973	-				-0.3
2,598,085	+				+0.6
2,598,085	+				+0.5
2,598,086	-				+0.0
2,598,135	+				-0.4
2,598,135	+				+0.3
2,598,136	-				-0.6
2,598,156	+		CA265_RS10490	0.12	+0.0
2,598,165	-		CA265_RS10490	0.14	-3.6
2,598,277	-		CA265_RS10490	0.33	+0.4