Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10470

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,594,582	+				+1.4
2,594,582	+				-0.3
2,594,619	+				-0.1
2,594,663	+				-0.4
2,594,728	-				+0.3
2,594,733	+				-0.4
2,594,734	-				-0.4
2,594,734	-				+0.2
2,594,773	+				-0.2
2,594,784	+				-1.1
2,594,847	+				-0.4
2,594,925	+				-0.1
2,594,931	+				-0.5
2,594,932	-				-2.8
2,594,972	-				-1.1
2,594,999	-				-1.4
2,595,000	+				-1.5
2,595,001	-				-1.7
2,595,001	-				-1.7
2,595,003	+				-1.1
2,595,009	+		CA265_RS10470	0.10	-1.4
2,595,041	+		CA265_RS10470	0.12	-1.3
2,595,059	+		CA265_RS10470	0.14	-1.6
2,595,133	+		CA265_RS10470	0.19	-0.1
2,595,262	+		CA265_RS10470	0.28	-3.1
2,595,292	+		CA265_RS10470	0.30	-0.1
2,595,393	+		CA265_RS10470	0.37	-1.6
2,595,406	+		CA265_RS10470	0.38	-2.0
2,595,474	-		CA265_RS10470	0.42	-1.4
2,595,476	-		CA265_RS10470	0.43	-0.5
2,595,477	+		CA265_RS10470	0.43	-1.3
2,595,537	+		CA265_RS10470	0.47	-1.4
2,595,537	+		CA265_RS10470	0.47	-1.0
2,595,620	-		CA265_RS10470	0.52	-2.1
2,595,628	-		CA265_RS10470	0.53	-2.5
2,595,685	-		CA265_RS10470	0.57	-2.2
2,595,746	+				+1.1
2,595,746	+		CA265_RS10470	0.61	-2.5
2,595,747	-		CA265_RS10470	0.61	+0.4
2,595,747	-		CA265_RS10470	0.61	-0.9
2,595,761	-		CA265_RS10470	0.62	-1.2
2,595,827	+		CA265_RS10470	0.67	-1.1
2,595,829	+		CA265_RS10470	0.67	-1.7
2,595,830	-		CA265_RS10470	0.67	-0.4
2,595,902	-		CA265_RS10470	0.72	-1.2
2,595,902	-		CA265_RS10470	0.72	-0.7
2,595,902	-		CA265_RS10470	0.72	-3.3
2,595,992	-		CA265_RS10470	0.78	-1.9
2,595,992	-		CA265_RS10470	0.78	-2.5
2,596,150	-		CA265_RS10470	0.89	-0.4
2,596,159	-		CA265_RS10470	0.90	-2.5
2,596,194	+				-1.5
2,596,246	-				-1.3
2,596,290	+				-1.2
2,596,290	+				-1.5
2,596,291	-				-2.3
2,596,301	-				-1.0
2,596,323	+				+0.1
2,596,323	+				-0.7
2,596,324	-				-0.6
2,596,325	+				-0.7
2,596,355	+				-0.2
2,596,378	-				+0.8
2,596,392	-				-1.3
2,596,401	+				+0.1
2,596,402	-				-0.4
2,596,439	+				-0.4
2,596,440	-				-2.6
2,596,448	+				-0.9
2,596,624	+		CA265_RS10475	0.21	-1.6
2,596,625	-		CA265_RS10475	0.21	-0.5
2,596,647	-		CA265_RS10475	0.24	-1.1
2,596,792	+		CA265_RS10475	0.39	+0.3
2,596,843	+		CA265_RS10475	0.45	-1.8
2,596,847	-		CA265_RS10475	0.45	-1.2
2,596,869	+		CA265_RS10475	0.48	-1.0
2,596,879	+		CA265_RS10475	0.49	-1.3
2,596,980	+		CA265_RS10475	0.60	+0.1
2,597,070	-		CA265_RS10475	0.70	-1.0
2,597,070	-		CA265_RS10475	0.70	-2.1
2,597,081	-		CA265_RS10475	0.71	-0.6
2,597,081	-		CA265_RS10475	0.71	-1.0
2,597,081	-		CA265_RS10475	0.71	-0.7
2,597,150	-		CA265_RS10475	0.79	-2.1
2,597,158	-		CA265_RS10475	0.79	-0.3
2,597,179	+		CA265_RS10475	0.82	-0.5
2,597,260	-				-0.6