Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09720

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,394,482	+		CA265_RS09715	0.23	-0.3
2,394,494	+		CA265_RS09715	0.24	+0.3
2,394,673	-		CA265_RS09715	0.44	+0.3
2,394,718	-		CA265_RS09715	0.49	+0.0
2,394,801	+		CA265_RS09715	0.59	+0.2
2,394,801	+		CA265_RS09715	0.59	+0.7
2,394,805	+		CA265_RS09715	0.59	-0.6
2,394,873	+		CA265_RS09715	0.67	-0.1
2,394,874	-		CA265_RS09715	0.67	-1.8
2,394,890	+		CA265_RS09715	0.69	-0.5
2,394,891	-		CA265_RS09715	0.69	-0.5
2,394,891	-		CA265_RS09715	0.69	-1.3
2,394,925	+		CA265_RS09715	0.73	+0.6
2,394,926	-		CA265_RS09715	0.73	-0.4
2,394,926	-		CA265_RS09715	0.73	-0.5
2,395,006	+		CA265_RS09715	0.82	-0.6
2,395,057	+		CA265_RS09715	0.88	-0.2
2,395,060	-		CA265_RS09715	0.88	+0.4
2,395,138	+				-0.0
2,395,734	-		CA265_RS09720	0.18	-1.3
2,395,756	+				-0.6
2,395,757	-		CA265_RS09720	0.18	-1.3
2,395,806	+		CA265_RS09720	0.20	-1.3
2,395,811	+		CA265_RS09720	0.21	-2.0
2,395,812	-		CA265_RS09720	0.21	-2.8
2,395,834	-		CA265_RS09720	0.22	+0.0
2,395,866	+		CA265_RS09720	0.23	-2.7
2,395,866	+		CA265_RS09720	0.23	-2.2
2,395,938	-		CA265_RS09720	0.26	-2.3
2,395,949	+		CA265_RS09720	0.26	-1.6
2,395,972	-		CA265_RS09720	0.27	-2.9
2,395,972	-		CA265_RS09720	0.27	-2.5
2,395,972	-		CA265_RS09720	0.27	-1.6
2,395,972	-		CA265_RS09720	0.27	-2.8
2,395,974	-		CA265_RS09720	0.27	-4.2
2,396,036	+		CA265_RS09720	0.30	-2.9
2,396,036	+		CA265_RS09720	0.30	-3.3
2,396,040	+		CA265_RS09720	0.30	-2.7
2,396,060	+		CA265_RS09720	0.31	-2.4
2,396,066	-		CA265_RS09720	0.31	-3.3
2,396,137	-		CA265_RS09720	0.34	-3.7
2,396,160	+		CA265_RS09720	0.35	-1.8
2,396,199	+		CA265_RS09720	0.36	-0.7
2,396,303	+		CA265_RS09720	0.41	-2.0
2,396,303	+		CA265_RS09720	0.41	-0.6
2,396,304	-		CA265_RS09720	0.41	-2.9
2,396,331	+		CA265_RS09720	0.42	-1.8
2,396,474	+		CA265_RS09720	0.48	-3.6
2,396,513	-		CA265_RS09720	0.49	-3.3
2,396,529	+		CA265_RS09720	0.50	-1.7
2,396,613	-		CA265_RS09720	0.53	-2.6
2,396,727	-		CA265_RS09720	0.58	-1.0
2,396,799	+		CA265_RS09720	0.61	-2.7
2,396,851	+		CA265_RS09720	0.63	-2.6
2,396,902	+		CA265_RS09720	0.65	-1.8
2,396,938	+		CA265_RS09720	0.67	-3.8
2,397,146	+		CA265_RS09720	0.75	-2.9
2,397,265	+		CA265_RS09720	0.80	-3.1
2,397,277	-		CA265_RS09720	0.80	-2.9
2,397,286	+		CA265_RS09720	0.81	-3.4
2,397,413	-		CA265_RS09720	0.86	-0.6
2,397,437	+		CA265_RS09720	0.87	-1.3
2,397,441	+		CA265_RS09720	0.87	-3.4
2,397,470	+		CA265_RS09720	0.88	-0.8
2,397,515	+				-0.7
2,397,516	-				-1.9
2,397,535	+				-0.8
2,397,660	-				+0.6
2,397,768	+				+0.3
2,397,781	-				-0.9
2,397,789	+				-0.5
2,397,790	-				-0.1
2,397,811	+				+0.3
2,397,839	+				-0.1
2,397,865	-				-0.2
2,397,929	+				+0.3
2,397,930	-				-0.2
2,397,930	-				+0.4
2,397,944	+				+0.1
2,397,949	+				-0.5
2,397,950	-				-0.4
2,397,970	+				+1.2
2,397,971	-				+0.7
2,397,984	-				-0.7
2,398,012	-				-0.6
2,398,030	+				+0.0
2,398,031	-				+0.1
2,398,087	-				+0.1
2,398,087	-				+0.0
2,398,089	+				+0.8
2,398,089	+				+0.2
2,398,172	+				-0.1
2,398,204	-				-0.8
2,398,208	+				-0.1
2,398,209	-				-0.7
2,398,301	-		CA265_RS09725	0.12	-0.2
2,398,400	+		CA265_RS09725	0.15	+0.1
2,398,401	-		CA265_RS09725	0.15	+0.0
2,398,535	-				+2.0
2,398,596	+		CA265_RS09725	0.21	+1.6
2,398,596	+		CA265_RS09725	0.21	+0.1
2,398,597	-		CA265_RS09725	0.21	+0.0
2,398,600	+		CA265_RS09725	0.21	+0.5
2,398,601	-		CA265_RS09725	0.21	-0.1
2,398,626	-		CA265_RS09725	0.22	+0.6
2,398,656	+		CA265_RS09725	0.23	+0.4
2,398,745	+		CA265_RS09725	0.26	+0.9
2,398,745	+		CA265_RS09725	0.26	-0.6
2,398,745	+		CA265_RS09725	0.26	+1.2
2,398,745	+		CA265_RS09725	0.26	+0.1