Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09010

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,247,347	-				-0.4
2,247,386	+				-1.5
2,247,587	-		CA265_RS09010	0.20	-2.3
2,247,617	+		CA265_RS09010	0.24	-0.3
2,247,630	+		CA265_RS09010	0.25	+1.4
2,247,713	-		CA265_RS09010	0.34	-1.3
2,247,799	-		CA265_RS09010	0.43	-0.8
2,247,836	+		CA265_RS09010	0.47	+0.3
2,247,867	-		CA265_RS09010	0.50	+0.0
2,247,916	+		CA265_RS09010	0.55	+1.0
2,247,916	+		CA265_RS09010	0.55	-1.7
2,247,916	+		CA265_RS09010	0.55	-2.2
2,247,917	-		CA265_RS09010	0.55	+0.3
2,248,008	-		CA265_RS09010	0.65	-1.0
2,248,008	-		CA265_RS09010	0.65	-1.5
2,248,030	+		CA265_RS09010	0.67	-1.1
2,248,100	+		CA265_RS09010	0.75	-1.2
2,248,101	-		CA265_RS09010	0.75	+0.5
2,248,156	+		CA265_RS09010	0.80	+1.0
2,248,259	+				-0.6
2,248,260	-				-0.3
2,248,260	-				+0.6
2,248,341	+				-0.8
2,248,360	+				+1.0
2,248,528	+				+0.6
2,248,582	+				+0.4
2,248,583	-				-1.2
2,248,583	-				-1.0
2,248,607	+				+0.3
2,248,666	+		CA265_RS09015	0.18	+0.6
2,248,669	-		CA265_RS09015	0.18	+0.2
2,248,669	-		CA265_RS09015	0.18	-0.9
2,248,669	-		CA265_RS09015	0.18	-0.4
2,248,754	-		CA265_RS09015	0.34	-0.6
2,248,755	+		CA265_RS09015	0.34	-0.3
2,248,756	-		CA265_RS09015	0.35	-0.1
2,248,780	+		CA265_RS09015	0.39	-0.3
2,248,819	+		CA265_RS09015	0.47	-0.5
2,248,822	-		CA265_RS09015	0.47	-0.4
2,248,866	-		CA265_RS09015	0.56	-0.9
2,248,959	+		CA265_RS09015	0.73	-0.3
2,249,005	+		CA265_RS09015	0.82	+0.5
2,249,021	-		CA265_RS09015	0.85	-0.1
2,249,022	+		CA265_RS09015	0.85	+0.2
2,249,033	-		CA265_RS09015	0.87	+0.1
2,249,056	+				+0.7
2,249,056	+				-0.1
2,249,066	+				+0.9
2,249,071	+				-0.3
2,249,082	+				-0.5
2,249,143	+				-0.7
2,249,166	-				-0.2
2,249,213	-				+0.0
2,249,222	+				+0.4
2,249,235	+				-0.6
2,249,268	+				+0.2