Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08905

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,223,734	-				-1.4
2,223,800	-		CA265_RS08900	0.14	-0.8
2,223,838	+		CA265_RS08900	0.18	-1.8
2,223,858	+		CA265_RS08900	0.20	+0.3
2,223,858	+		CA265_RS08900	0.20	-1.1
2,224,096	-		CA265_RS08900	0.45	-1.4
2,224,158	+		CA265_RS08900	0.51	-1.2
2,224,307	-		CA265_RS08900	0.66	-1.2
2,224,353	+		CA265_RS08900	0.71	-1.0
2,224,353	+		CA265_RS08900	0.71	-1.7
2,224,354	-		CA265_RS08900	0.71	+0.2
2,224,422	+		CA265_RS08900	0.78	-1.1
2,224,492	+		CA265_RS08900	0.85	-0.8
2,224,493	-		CA265_RS08900	0.86	-0.1
2,224,546	-				+0.1
2,224,564	+				-0.8
2,224,598	-				-1.5
2,224,652	+				+0.2
2,224,682	-				-0.7
2,224,756	-				-0.6
2,224,950	+		CA265_RS08905	0.10	-0.5
2,224,984	+		CA265_RS08905	0.12	-2.0
2,225,062	+		CA265_RS08905	0.15	-0.4
2,225,249	-		CA265_RS08905	0.24	-1.8
2,225,270	-		CA265_RS08905	0.25	-2.5
2,225,294	-				-1.3
2,225,329	+		CA265_RS08905	0.28	-1.0
2,225,402	-		CA265_RS08905	0.31	-1.8
2,225,437	+		CA265_RS08905	0.33	-0.7
2,225,491	-		CA265_RS08905	0.35	-0.1
2,225,514	-		CA265_RS08905	0.36	-0.8
2,225,608	+		CA265_RS08905	0.40	-0.8
2,225,675	+				+1.0
2,225,831	+		CA265_RS08905	0.51	-1.1
2,226,162	-		CA265_RS08905	0.66	-2.0
2,226,223	+		CA265_RS08905	0.68	+1.6
2,226,237	-		CA265_RS08905	0.69	+1.7
2,226,325	+		CA265_RS08905	0.73	-0.6
2,226,325	+		CA265_RS08905	0.73	+0.3
2,226,477	+		CA265_RS08905	0.80	-0.6
2,226,577	+		CA265_RS08905	0.85	+0.4
2,226,903	+				-0.0
2,226,994	+				+0.7
2,226,995	-				+0.6
2,226,999	-				+0.3
2,227,012	+				-1.6
2,227,085	+		CA265_RS08910	0.11	-3.0
2,227,182	-		CA265_RS08910	0.23	-0.7
2,227,268	+		CA265_RS08910	0.33	+0.2
2,227,269	-		CA265_RS08910	0.33	-1.6
2,227,321	+		CA265_RS08910	0.40	-0.5
2,227,322	-		CA265_RS08910	0.40	-1.5
2,227,496	+		CA265_RS08910	0.61	-1.0
2,227,583	+		CA265_RS08910	0.72	-2.0
2,227,621	+		CA265_RS08910	0.77	-1.7
2,227,690	+		CA265_RS08910	0.85	-0.8
2,227,742	+				-1.4
2,227,743	-				-0.4
2,227,747	+				-2.0
2,227,775	-				-1.3
2,227,802	+				+0.1
2,227,802	+				+0.2
2,227,803	-				-1.7
2,227,872	-				-0.8
2,227,890	+		CA265_RS08915	0.11	+0.1