Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08900

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,222,748	-		CA265_RS08895	0.17	+0.1
2,222,807	-		CA265_RS08895	0.23	+0.5
2,222,856	+		CA265_RS08895	0.27	+0.4
2,222,916	+		CA265_RS08895	0.33	-1.2
2,222,916	+		CA265_RS08895	0.33	+0.5
2,222,924	-		CA265_RS08895	0.34	+1.2
2,222,979	-		CA265_RS08895	0.39	-0.0
2,222,986	-		CA265_RS08895	0.39	-1.6
2,222,986	-		CA265_RS08895	0.39	-0.0
2,223,017	+		CA265_RS08895	0.42	+0.4
2,223,130	+		CA265_RS08895	0.52	+0.4
2,223,149	-		CA265_RS08895	0.54	-1.0
2,223,159	+		CA265_RS08895	0.55	+0.3
2,223,176	-		CA265_RS08895	0.57	+0.1
2,223,215	+		CA265_RS08895	0.60	+0.8
2,223,251	+		CA265_RS08895	0.63	-0.1
2,223,265	+		CA265_RS08895	0.65	-0.7
2,223,272	+		CA265_RS08895	0.65	+0.3
2,223,273	-		CA265_RS08895	0.65	+0.1
2,223,274	+		CA265_RS08895	0.66	-0.5
2,223,299	-		CA265_RS08895	0.68	+0.0
2,223,339	-		CA265_RS08895	0.72	-0.4
2,223,371	-		CA265_RS08895	0.74	+0.6
2,223,393	-		CA265_RS08895	0.76	-0.1
2,223,469	+		CA265_RS08895	0.83	-0.5
2,223,527	+		CA265_RS08895	0.89	+0.5
2,223,528	-		CA265_RS08895	0.89	+0.1
2,223,542	+				-1.6
2,223,559	+				-0.1
2,223,587	+				+0.0
2,223,627	-				+0.0
2,223,665	+				-0.2
2,223,672	+				-1.3
2,223,714	-				-2.3
2,223,734	-				-1.4
2,223,800	-		CA265_RS08900	0.14	-0.8
2,223,838	+		CA265_RS08900	0.18	-1.8
2,223,858	+		CA265_RS08900	0.20	+0.3
2,223,858	+		CA265_RS08900	0.20	-1.1
2,224,096	-		CA265_RS08900	0.45	-1.4
2,224,158	+		CA265_RS08900	0.51	-1.2
2,224,307	-		CA265_RS08900	0.66	-1.2
2,224,353	+		CA265_RS08900	0.71	-1.0
2,224,353	+		CA265_RS08900	0.71	-1.7
2,224,354	-		CA265_RS08900	0.71	+0.2
2,224,422	+		CA265_RS08900	0.78	-1.1
2,224,492	+		CA265_RS08900	0.85	-0.8
2,224,493	-		CA265_RS08900	0.86	-0.1
2,224,546	-				+0.1
2,224,564	+				-0.8
2,224,598	-				-1.5
2,224,652	+				+0.2
2,224,682	-				-0.7
2,224,756	-				-0.6
2,224,950	+		CA265_RS08905	0.10	-0.5
2,224,984	+		CA265_RS08905	0.12	-2.0
2,225,062	+		CA265_RS08905	0.15	-0.4
2,225,249	-		CA265_RS08905	0.24	-1.8
2,225,270	-		CA265_RS08905	0.25	-2.5
2,225,294	-				-1.3
2,225,329	+		CA265_RS08905	0.28	-1.0
2,225,402	-		CA265_RS08905	0.31	-1.8
2,225,437	+		CA265_RS08905	0.33	-0.7
2,225,491	-		CA265_RS08905	0.35	-0.1
2,225,514	-		CA265_RS08905	0.36	-0.8
2,225,608	+		CA265_RS08905	0.40	-0.8