Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08085

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
2,008,521	-		CA265_RS08075	0.50	-0.3
2,008,535	+		CA265_RS08075	0.52	-0.1
2,008,787	+		CA265_RS08075	0.77	-1.5
2,008,901	+		CA265_RS08075	0.89	-0.4
2,008,902	-		CA265_RS08075	0.89	-0.8
2,008,902	-		CA265_RS08075	0.89	-0.1
2,008,908	+		CA265_RS08075	0.89	-0.1
2,008,967	-				+0.6
2,008,971	+				-2.2
2,008,978	+				+0.2
2,008,979	-				-0.9
2,008,989	-				-0.9
2,009,001	-				+1.0
2,009,118	+		CA265_RS08080	0.24	-0.6
2,009,145	-		CA265_RS08080	0.31	-0.0
2,009,154	-		CA265_RS08080	0.33	+1.0
2,009,235	+		CA265_RS08080	0.53	-0.1
2,009,241	+		CA265_RS08080	0.54	+0.1
2,009,294	+		CA265_RS08080	0.67	-1.4
2,009,294	+		CA265_RS08080	0.67	-0.2
2,009,343	-		CA265_RS08080	0.79	+0.2
2,009,364	-		CA265_RS08080	0.84	-0.4
2,009,364	-		CA265_RS08080	0.84	+0.8
2,009,364	-		CA265_RS08080	0.84	+0.3
2,009,368	-		CA265_RS08080	0.85	-0.3
2,009,368	-		CA265_RS08080	0.85	+1.5
2,009,368	-		CA265_RS08080	0.85	+0.4
2,009,368	-		CA265_RS08080	0.85	+0.2
2,009,413	-				+0.5
2,009,422	-				-0.1
2,009,429	-				+1.2
2,009,433	-				-0.9
2,009,436	+				-0.7
2,009,545	+		CA265_RS08085	0.11	-4.8
2,009,549	+		CA265_RS08085	0.12	-2.9
2,009,550	-		CA265_RS08085	0.12	-2.7
2,009,552	-		CA265_RS08085	0.12	-1.0
2,009,595	-		CA265_RS08085	0.16	-2.6
2,009,636	+		CA265_RS08085	0.20	-1.8
2,009,636	+		CA265_RS08085	0.20	-3.9
2,009,636	+		CA265_RS08085	0.20	-3.6
2,009,637	-		CA265_RS08085	0.20	-0.6
2,009,637	-		CA265_RS08085	0.20	-1.5
2,009,638	+		CA265_RS08085	0.20	-2.7
2,009,648	-		CA265_RS08085	0.21	-2.7
2,009,648	-		CA265_RS08085	0.21	-1.4
2,009,659	-		CA265_RS08085	0.22	-0.6
2,009,733	+		CA265_RS08085	0.29	-1.7
2,009,775	+		CA265_RS08085	0.33	-3.3
2,009,836	-		CA265_RS08085	0.39	-0.9
2,009,836	-		CA265_RS08085	0.39	-1.4
2,009,836	-		CA265_RS08085	0.39	-1.0
2,009,841	+		CA265_RS08085	0.39	-2.6
2,009,857	-		CA265_RS08085	0.41	-1.6
2,009,898	-		CA265_RS08085	0.45	-0.6
2,009,903	-		CA265_RS08085	0.45	-0.8
2,009,903	-		CA265_RS08085	0.45	-1.9
2,009,999	+		CA265_RS08085	0.54	-1.8
2,010,156	+		CA265_RS08085	0.69	-2.9
2,010,161	+		CA265_RS08085	0.70	-5.4
2,010,166	-		CA265_RS08085	0.70	-1.6
2,010,334	-		CA265_RS08085	0.86	-1.0
2,010,430	-				-1.7
2,010,472	-				+0.5
2,010,486	+				-2.9
2,010,492	-				+1.2
2,010,494	+				-1.3
2,010,520	-				-2.4
2,010,525	-				-4.1
2,010,543	+				-3.3
2,010,575	+				-3.0
2,010,575	+				-2.8
2,010,576	-				-3.0
2,010,591	-		CA265_RS08090	0.12	-4.8
2,010,591	-		CA265_RS08090	0.12	-4.4
2,010,691	-		CA265_RS08090	0.25	-4.6
2,010,711	-		CA265_RS08090	0.27	-2.5
2,011,295	+				-3.8
2,011,295	+				-3.6
2,011,296	-				+0.4
2,011,296	-				-0.3
2,011,335	-				+0.1
2,011,450	+				-0.2