Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07950

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,982,069	+		CA265_RS07940	0.73	-1.2
1,982,070	-		CA265_RS07940	0.73	+0.2
1,982,158	+		CA265_RS07940	0.80	-1.2
1,982,158	+		CA265_RS07940	0.80	+0.7
1,982,158	+		CA265_RS07940	0.80	-0.9
1,982,159	-		CA265_RS07940	0.80	+0.3
1,982,163	+		CA265_RS07940	0.81	-0.4
1,982,213	-		CA265_RS07940	0.84	+0.0
1,982,246	+		CA265_RS07940	0.87	-0.6
1,982,274	-		CA265_RS07940	0.89	+0.8
1,982,335	+				-1.0
1,982,336	-				-0.3
1,982,337	+				-0.1
1,982,378	-				-1.0
1,982,400	+				-0.6
1,982,400	+				-0.0
1,982,556	+		CA265_RS07945	0.25	-0.8
1,982,577	-		CA265_RS07945	0.28	+1.3
1,982,703	-		CA265_RS07945	0.49	-0.1
1,982,742	+		CA265_RS07945	0.56	+0.6
1,982,765	+		CA265_RS07945	0.59	-1.1
1,982,773	+		CA265_RS07945	0.61	-0.2
1,982,815	-		CA265_RS07945	0.68	+0.6
1,982,817	+		CA265_RS07945	0.68	+0.5
1,982,818	-		CA265_RS07945	0.68	+1.0
1,982,890	+		CA265_RS07945	0.80	-0.1
1,982,905	-		CA265_RS07945	0.83	+0.5
1,982,919	-		CA265_RS07945	0.85	-0.3
1,982,936	-		CA265_RS07945	0.88	+0.8
1,982,936	-		CA265_RS07945	0.88	-0.1
1,982,953	-				+0.4
1,983,020	-				+0.2
1,983,020	-				-0.3
1,983,139	-		CA265_RS07950	0.11	-1.0
1,983,269	-		CA265_RS07950	0.23	-0.2
1,983,296	-		CA265_RS07950	0.25	+0.3
1,983,296	-		CA265_RS07950	0.25	-0.5
1,983,324	+		CA265_RS07950	0.28	-0.4
1,983,328	-		CA265_RS07950	0.28	+0.4
1,983,328	-		CA265_RS07950	0.28	+1.0
1,983,523	+		CA265_RS07950	0.46	-0.0
1,983,523	+		CA265_RS07950	0.46	-1.8
1,983,524	-		CA265_RS07950	0.46	-0.6
1,983,524	-		CA265_RS07950	0.46	+0.1
1,983,525	+		CA265_RS07950	0.46	-0.8
1,983,552	-		CA265_RS07950	0.49	-1.3
1,983,624	-		CA265_RS07950	0.55	+0.4
1,983,815	+		CA265_RS07950	0.73	-1.5
1,983,833	+		CA265_RS07950	0.74	+0.0
1,983,878	+		CA265_RS07950	0.78	-0.7
1,983,889	-		CA265_RS07950	0.79	-0.3
1,983,889	-		CA265_RS07950	0.79	-0.4
1,983,889	-		CA265_RS07950	0.79	+0.7
1,984,059	-				-1.6
1,984,059	-				+2.0
1,984,114	+				-0.1
1,984,114	+				-0.3
1,984,115	-				+0.9
1,984,115	-				-0.3
1,984,115	-				-0.0
1,984,147	+				+0.9
1,984,150	-				-0.5
1,984,269	-				-0.6
1,984,318	-				-0.1
1,984,319	+				-0.3
1,984,351	+		CA265_RS07955	0.12	-0.1
1,984,360	-		CA265_RS07955	0.12	-0.2
1,984,360	-		CA265_RS07955	0.12	+0.1
1,984,370	+		CA265_RS07955	0.13	-0.7
1,984,371	-		CA265_RS07955	0.13	+0.1
1,984,429	+		CA265_RS07955	0.16	+0.1
1,984,495	+		CA265_RS07955	0.19	-0.6
1,984,529	-		CA265_RS07955	0.21	-0.3
1,984,619	-		CA265_RS07955	0.26	-1.8
1,984,619	-		CA265_RS07955	0.26	-0.5
1,984,619	-		CA265_RS07955	0.26	-0.1
1,984,619	-		CA265_RS07955	0.26	+1.2
1,984,622	+		CA265_RS07955	0.26	-0.5
1,984,659	+				-1.0
1,984,695	-		CA265_RS07955	0.30	+0.1
1,984,698	+		CA265_RS07955	0.30	-0.3
1,984,718	-		CA265_RS07955	0.32	-1.1
1,984,718	-		CA265_RS07955	0.32	-0.2
1,984,786	+		CA265_RS07955	0.35	-0.1
1,984,844	-		CA265_RS07955	0.38	+0.0
1,984,844	-		CA265_RS07955	0.38	-0.5
1,984,919	+		CA265_RS07955	0.42	-1.0
1,984,920	-		CA265_RS07955	0.43	-0.2
1,984,933	+		CA265_RS07955	0.43	+0.0
1,985,019	+		CA265_RS07955	0.48	-0.9
1,985,058	+		CA265_RS07955	0.50	-0.0
1,985,058	+		CA265_RS07955	0.50	-0.3
1,985,060	+		CA265_RS07955	0.50	-1.3
1,985,077	-		CA265_RS07955	0.51	-0.0
1,985,096	-		CA265_RS07955	0.52	+0.7