Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06400

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,585,718	+				-0.6
1,585,718	+				+0.3
1,585,736	+		CA265_RS06395	0.11	-0.8
1,585,738	+		CA265_RS06395	0.11	-0.7
1,585,762	+		CA265_RS06395	0.13	-1.2
1,585,762	+		CA265_RS06395	0.13	-0.4
1,585,783	+		CA265_RS06395	0.16	-0.2
1,585,784	-		CA265_RS06395	0.16	-0.2
1,585,845	+		CA265_RS06395	0.22	-0.0
1,585,927	+		CA265_RS06395	0.30	-0.5
1,585,932	-		CA265_RS06395	0.31	-0.4
1,585,940	+		CA265_RS06395	0.32	-1.2
1,585,940	+		CA265_RS06395	0.32	-2.1
1,585,941	-		CA265_RS06395	0.32	+0.2
1,586,173	+		CA265_RS06395	0.56	-0.6
1,586,174	-		CA265_RS06395	0.56	-0.1
1,586,189	+		CA265_RS06395	0.57	+2.0
1,586,222	+		CA265_RS06395	0.61	-0.6
1,586,317	-		CA265_RS06395	0.71	+0.9
1,586,390	+		CA265_RS06395	0.78	-0.5
1,586,396	-		CA265_RS06395	0.79	+0.4
1,586,396	-		CA265_RS06395	0.79	-0.7
1,586,419	+		CA265_RS06395	0.81	-0.9
1,586,420	-		CA265_RS06395	0.81	+0.0
1,586,552	+				+0.4
1,586,563	+				-1.2
1,586,743	+				-1.5
1,586,839	+		CA265_RS06400	0.19	-1.4
1,586,914	+		CA265_RS06400	0.31	-0.9
1,586,917	+		CA265_RS06400	0.31	-1.0
1,586,928	+		CA265_RS06400	0.33	-0.9
1,586,995	+		CA265_RS06400	0.43	-0.3
1,587,000	-		CA265_RS06400	0.44	-0.2
1,587,039	+		CA265_RS06400	0.50	-1.9
1,587,079	+		CA265_RS06400	0.56	-0.9
1,587,080	-		CA265_RS06400	0.56	+0.3
1,587,080	-		CA265_RS06400	0.56	-1.5
1,587,082	+		CA265_RS06400	0.57	+0.4
1,587,144	+		CA265_RS06400	0.66	-0.7
1,587,213	+		CA265_RS06400	0.77	-0.5
1,587,274	-		CA265_RS06400	0.86	-0.7
1,587,274	-		CA265_RS06400	0.86	-1.2
1,587,274	-		CA265_RS06400	0.86	-0.3
1,587,274	-		CA265_RS06400	0.86	-0.4
1,587,278	-		CA265_RS06400	0.87	-0.9
1,587,325	-				-0.5
1,587,346	+				-1.4
1,587,350	+				-0.9
1,587,410	+		CA265_RS06405	0.11	-1.9
1,587,442	+		CA265_RS06405	0.28	-0.4
1,587,532	+		CA265_RS06405	0.77	-0.1
1,587,575	-				+1.6
1,587,584	-				+0.7
1,587,594	+				-0.3
1,587,595	-				+0.1
1,587,595	-				+0.6
1,587,608	-				-1.0
1,587,681	-				-0.2
1,587,717	-				+2.7
1,587,720	+				+0.4
1,587,721	-				+0.2
1,587,752	+				+0.2
1,587,884	-				+0.0
1,587,933	+				-0.2
1,588,019	+				-0.2
1,588,074	+				+0.3
1,588,173	-				+0.6