Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04925

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,174,027	+		CA265_RS04920	0.38	-0.7
1,174,027	+		CA265_RS04920	0.38	+0.0
1,174,028	-		CA265_RS04920	0.38	-0.4
1,174,034	-		CA265_RS04920	0.38	-0.3
1,174,034	-		CA265_RS04920	0.38	+0.3
1,174,049	-		CA265_RS04920	0.39	-1.1
1,174,109	+		CA265_RS04920	0.43	-0.5
1,174,253	+		CA265_RS04920	0.53	-0.2
1,174,254	-		CA265_RS04920	0.53	-0.1
1,174,264	-		CA265_RS04920	0.54	-0.8
1,174,399	-		CA265_RS04920	0.64	-0.7
1,174,399	-		CA265_RS04920	0.64	+0.6
1,174,627	+		CA265_RS04920	0.80	+0.0
1,174,996	-				-2.8
1,174,996	-				-4.2
1,174,996	-				-4.6
1,175,008	-				-4.8
1,175,090	+		CA265_RS04925	0.16	-0.8
1,175,091	-		CA265_RS04925	0.16	-3.8
1,175,094	-		CA265_RS04925	0.16	-4.6
1,175,101	-		CA265_RS04925	0.17	-4.5
1,175,106	-		CA265_RS04925	0.18	-4.2
1,175,106	-		CA265_RS04925	0.18	-5.1
1,175,106	-		CA265_RS04925	0.18	-3.2
1,175,109	-		CA265_RS04925	0.18	-2.0
1,175,137	+		CA265_RS04925	0.21	+0.5
1,175,138	-		CA265_RS04925	0.21	-3.8
1,175,138	-		CA265_RS04925	0.21	-4.9
1,175,230	-		CA265_RS04925	0.33	-3.2
1,175,245	-		CA265_RS04925	0.35	-1.1
1,175,262	+		CA265_RS04925	0.37	-0.2
1,175,263	-		CA265_RS04925	0.37	-4.3
1,175,263	-		CA265_RS04925	0.37	-3.7
1,175,264	+		CA265_RS04925	0.37	-2.5
1,175,265	-		CA265_RS04925	0.37	-4.3
1,175,312	-		CA265_RS04925	0.43	-3.4
1,175,504	+		CA265_RS04925	0.66	-0.1
1,175,505	-		CA265_RS04925	0.66	-3.7
1,175,505	-		CA265_RS04925	0.66	-1.3
1,175,505	-		CA265_RS04925	0.66	-4.1
1,175,526	+		CA265_RS04925	0.69	+0.1
1,175,635	+		CA265_RS04925	0.82	+0.6
1,175,660	+		CA265_RS04925	0.85	-1.5
1,175,660	+		CA265_RS04925	0.85	-0.9
1,175,660	+		CA265_RS04925	0.85	+0.1
1,175,660	+		CA265_RS04925	0.85	+0.4
1,175,661	-		CA265_RS04925	0.86	-2.9
1,175,661	-		CA265_RS04925	0.86	-1.7
1,175,844	-				-1.4
1,175,910	-				-3.6
1,175,910	-				-4.4
1,176,082	+				+0.2
1,176,085	-				-3.4
1,176,126	+				+0.2
1,176,141	-				-3.1
1,176,142	+				-0.5
1,176,621	-				-0.5
1,176,691	-				-0.6
1,176,727	+		CA265_RS04940	0.14	+0.6