Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04715

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,122,791	+		CA265_RS04700	0.69	-2.0
1,122,808	+		CA265_RS04700	0.72	+0.2
1,122,854	-		CA265_RS04700	0.81	+0.6
1,122,890	+		CA265_RS04700	0.89	-0.4
1,122,891	-		CA265_RS04700	0.89	+1.5
1,122,980	+				-0.0
1,122,980	+				+0.7
1,122,980	+				-0.2
1,123,004	+				-0.7
1,123,058	+		CA265_RS04705	0.23	-0.1
1,123,059	-		CA265_RS04705	0.23	+0.3
1,123,062	+		CA265_RS04705	0.24	-1.6
1,123,062	+		CA265_RS04705	0.24	+0.4
1,123,063	-		CA265_RS04705	0.24	+0.4
1,123,103	-		CA265_RS04705	0.33	-2.6
1,123,153	-		CA265_RS04705	0.45	-0.2
1,123,153	-		CA265_RS04705	0.45	+0.2
1,123,206	-		CA265_RS04705	0.58	+0.2
1,123,380	+				-0.1
1,123,381	-				-0.3
1,123,381	-				+0.1
1,123,411	-				+0.4
1,123,418	-				-0.4
1,123,444	-		CA265_RS04710	0.15	+0.3
1,123,531	+		CA265_RS04710	0.38	+0.1
1,123,535	-		CA265_RS04710	0.39	+0.7
1,123,537	-		CA265_RS04710	0.40	-0.6
1,123,576	+		CA265_RS04710	0.50	-0.4
1,123,576	+		CA265_RS04710	0.50	+0.0
1,123,580	+		CA265_RS04710	0.51	-0.2
1,123,752	+				-0.3
1,123,800	-				-0.3
1,124,016	-		CA265_RS04715	0.54	-0.4
1,124,016	-		CA265_RS04715	0.54	-0.7
1,124,089	+		CA265_RS04715	0.72	-0.8
1,124,090	-		CA265_RS04715	0.72	-1.6
1,124,156	+		CA265_RS04715	0.88	-0.0
1,124,191	-				+0.5
1,124,202	-				-1.0
1,124,291	+				-1.0
1,124,342	-				-0.1
1,124,359	+				-0.1
1,124,360	-				-0.7
1,124,371	+				-0.0
1,124,386	+				-0.2
1,124,389	-				-0.2
1,124,418	-				-0.4
1,124,429	-				+0.3
1,124,481	+				+0.2
1,124,512	+		CA265_RS04720	0.12	-0.4
1,124,513	-		CA265_RS04720	0.12	-0.1
1,124,655	+		CA265_RS04720	0.50	-0.3
1,124,656	-		CA265_RS04720	0.50	-0.3
1,124,656	-		CA265_RS04720	0.50	-0.1
1,124,657	+		CA265_RS04720	0.50	+1.3
1,124,658	-		CA265_RS04720	0.51	-0.4
1,124,661	-		CA265_RS04720	0.51	-0.7
1,124,667	+		CA265_RS04720	0.53	-0.5
1,124,667	+		CA265_RS04720	0.53	-0.6
1,124,787	+		CA265_RS04720	0.85	-0.4
1,124,822	-				+0.2
1,124,897	+				+0.2
1,124,930	+				-0.3
1,124,930	+				+0.2
1,124,931	-				+0.6
1,124,963	+				-0.2
1,125,018	+		CA265_RS04725	0.17	-1.0
1,125,083	+		CA265_RS04725	0.32	+0.0
1,125,085	+		CA265_RS04725	0.33	+0.2
1,125,086	-		CA265_RS04725	0.33	+0.2
1,125,088	+		CA265_RS04725	0.33	+1.0
1,125,141	-		CA265_RS04725	0.46	+0.5
1,125,141	-		CA265_RS04725	0.46	+0.4
1,125,198	-		CA265_RS04725	0.59	-0.2