Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04415

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,058,315	+				-0.1
1,058,326	-				+0.0
1,058,384	-				+0.0
1,058,417	-				+0.2
1,058,446	+				-0.9
1,058,488	+		CA265_RS04410	0.12	-0.1
1,058,491	-		CA265_RS04410	0.13	-1.0
1,058,491	-		CA265_RS04410	0.13	-0.1
1,058,491	-		CA265_RS04410	0.13	-0.2
1,058,642	-		CA265_RS04410	0.35	+0.6
1,058,717	+		CA265_RS04410	0.46	-0.6
1,058,761	-		CA265_RS04410	0.53	-0.3
1,058,762	+		CA265_RS04410	0.53	-0.3
1,058,785	+		CA265_RS04410	0.56	-1.0
1,058,785	+		CA265_RS04410	0.56	+0.9
1,058,824	+		CA265_RS04410	0.62	+0.0
1,058,949	-		CA265_RS04410	0.80	-0.1
1,059,114	-				+0.3
1,059,114	-				-1.1
1,059,142	-				-0.2
1,059,188	-				-0.5
1,059,220	+				+0.3
1,059,220	+				-0.6
1,059,233	-				-0.1
1,059,233	-				-0.1
1,059,233	-				-0.6
1,059,252	-				-0.1
1,059,288	-				-1.5
1,059,361	+				-0.6
1,059,362	-				-0.5
1,059,386	+				+0.1
1,059,386	+				+0.2
1,059,387	-				-1.2
1,059,387	-				-1.4
1,059,388	+				-0.9
1,059,388	+				-1.1
1,059,391	+				-0.3
1,059,392	-				+0.2
1,059,399	-				-0.4
1,059,444	+				-1.8
1,059,445	-				-0.9
1,059,459	+		CA265_RS04415	0.10	-0.7
1,059,590	+		CA265_RS04415	0.18	-1.6
1,059,590	+		CA265_RS04415	0.18	+0.6
1,059,599	-		CA265_RS04415	0.18	-0.6
1,059,650	-		CA265_RS04415	0.21	-1.3
1,059,675	-		CA265_RS04415	0.22	-1.6
1,059,716	+		CA265_RS04415	0.25	-0.8
1,059,720	-		CA265_RS04415	0.25	-1.1
1,059,728	-		CA265_RS04415	0.25	-1.6
1,059,740	+		CA265_RS04415	0.26	-0.3
1,059,755	+		CA265_RS04415	0.27	-1.0
1,059,756	-		CA265_RS04415	0.27	-0.6
1,059,763	-		CA265_RS04415	0.27	-2.4
1,059,824	+		CA265_RS04415	0.31	+0.2
1,059,869	+		CA265_RS04415	0.33	-0.7
1,059,870	-		CA265_RS04415	0.33	-1.2
1,059,911	+		CA265_RS04415	0.36	-1.4
1,059,936	+		CA265_RS04415	0.37	-1.5
1,059,937	-		CA265_RS04415	0.37	-2.3
1,060,052	+		CA265_RS04415	0.44	-0.8
1,060,052	+		CA265_RS04415	0.44	-1.1
1,060,053	-		CA265_RS04415	0.44	-1.6
1,060,094	+		CA265_RS04415	0.46	-1.9
1,060,112	-		CA265_RS04415	0.47	-1.9
1,060,224	+		CA265_RS04415	0.53	+0.1
1,060,224	+		CA265_RS04415	0.53	-1.3
1,060,331	+		CA265_RS04415	0.60	-0.6
1,060,332	-		CA265_RS04415	0.60	-2.1
1,060,377	-		CA265_RS04415	0.62	-0.2
1,060,393	-		CA265_RS04415	0.63	+0.2
1,060,396	+		CA265_RS04415	0.63	-1.1
1,060,397	-		CA265_RS04415	0.63	-0.9
1,060,420	+		CA265_RS04415	0.65	+0.1
1,060,531	-		CA265_RS04415	0.71	-1.7
1,060,531	-		CA265_RS04415	0.71	-0.9
1,060,607	-		CA265_RS04415	0.75	-2.0
1,060,626	+		CA265_RS04415	0.76	-0.9
1,060,636	+		CA265_RS04415	0.77	-1.1
1,060,726	-		CA265_RS04415	0.82	-0.5
1,060,726	-		CA265_RS04415	0.82	-2.2
1,060,735	+		CA265_RS04415	0.82	-0.6
1,060,739	+		CA265_RS04415	0.83	-0.6
1,060,739	+		CA265_RS04415	0.83	-0.7
1,060,740	-		CA265_RS04415	0.83	-0.4
1,060,748	+		CA265_RS04415	0.83	-0.8
1,060,752	-		CA265_RS04415	0.83	-1.5
1,060,795	-		CA265_RS04415	0.86	-0.5
1,060,801	-		CA265_RS04415	0.86	-1.7
1,060,860	-		CA265_RS04415	0.89	-1.8
1,060,860	-		CA265_RS04415	0.89	-2.1
1,060,896	+				-1.2
1,060,904	+				-2.1
1,060,963	-				-1.1
1,060,980	+				-0.6
1,060,987	-				-1.2
1,061,012	+				-0.5
1,061,013	-				-1.6
1,061,611	+				+1.1
1,061,733	-		CA265_RS04425	0.33	+0.6
1,061,772	+		CA265_RS04425	0.43	+0.8
1,061,776	+		CA265_RS04425	0.44	+0.2
1,061,811	-		CA265_RS04425	0.54	+0.5
1,061,811	-		CA265_RS04425	0.54	+0.4
1,061,812	+		CA265_RS04425	0.54	-1.0
1,061,815	-		CA265_RS04425	0.55	+0.2
1,061,930	-		CA265_RS04425	0.86	+0.6
1,061,930	-		CA265_RS04425	0.86	+0.1
1,062,016	-				+1.5
1,062,020	-				-0.6