Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04275

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,032,957	-		CA265_RS04265	0.83	+0.8
1,032,978	-		CA265_RS04265	0.89	-0.1
1,033,053	-				-0.6
1,033,078	-				-1.3
1,033,111	+				-1.4
1,034,040	-		CA265_RS04275	0.14	-0.6
1,034,041	+		CA265_RS04275	0.14	-2.6
1,034,085	+		CA265_RS04275	0.18	-0.2
1,034,086	-		CA265_RS04275	0.18	-0.8
1,034,120	-		CA265_RS04275	0.21	-0.1
1,034,120	-		CA265_RS04275	0.21	-0.9
1,034,169	-		CA265_RS04275	0.24	+0.0
1,034,341	+		CA265_RS04275	0.38	-1.1
1,034,398	+		CA265_RS04275	0.43	-1.2
1,034,399	-		CA265_RS04275	0.43	-0.3
1,034,399	-		CA265_RS04275	0.43	-0.1
1,034,403	-		CA265_RS04275	0.43	-1.3
1,034,418	-		CA265_RS04275	0.45	-0.8
1,034,448	-		CA265_RS04275	0.47	-0.3
1,034,507	+		CA265_RS04275	0.52	-1.2
1,034,515	+		CA265_RS04275	0.52	-0.9
1,034,516	-		CA265_RS04275	0.52	-0.5
1,034,582	+		CA265_RS04275	0.58	-0.6
1,034,583	-		CA265_RS04275	0.58	-1.0
1,034,583	-		CA265_RS04275	0.58	+0.3
1,034,587	+		CA265_RS04275	0.58	-1.3
1,034,588	-		CA265_RS04275	0.58	-1.4
1,034,588	-		CA265_RS04275	0.58	+0.0
1,034,592	-		CA265_RS04275	0.59	-0.1
1,034,645	+		CA265_RS04275	0.63	-0.7
1,034,713	-		CA265_RS04275	0.68	-0.5
1,034,714	+		CA265_RS04275	0.68	-0.9
1,034,715	-		CA265_RS04275	0.69	-0.8
1,034,715	-		CA265_RS04275	0.69	-0.9
1,034,802	-		CA265_RS04275	0.76	+0.8
1,034,856	+		CA265_RS04275	0.80	-1.6
1,034,857	-		CA265_RS04275	0.80	-0.2
1,034,942	+		CA265_RS04275	0.87	-0.8
1,035,006	-				-0.0
1,035,148	-				-0.4
1,035,200	-				-0.4
1,035,268	-				+0.7
1,035,334	+				+0.2
1,035,335	-				-0.3
1,035,349	-		CA265_RS04280	0.11	-0.2
1,035,365	+		CA265_RS04280	0.13	-1.6
1,035,366	-		CA265_RS04280	0.14	+1.6
1,035,368	-		CA265_RS04280	0.14	-0.4
1,035,389	-		CA265_RS04280	0.16	+0.4
1,035,389	-		CA265_RS04280	0.16	+0.1
1,035,392	+		CA265_RS04280	0.17	+1.1
1,035,392	+		CA265_RS04280	0.17	-0.4
1,035,397	-		CA265_RS04280	0.17	-0.0
1,035,531	+		CA265_RS04280	0.34	-0.5
1,035,532	-		CA265_RS04280	0.34	-0.4
1,035,613	-		CA265_RS04280	0.44	-2.3
1,035,671	+		CA265_RS04280	0.51	+0.0
1,035,715	+		CA265_RS04280	0.57	-0.2
1,035,822	+		CA265_RS04280	0.70	-0.0
1,035,837	+		CA265_RS04280	0.72	-0.7
1,035,837	+		CA265_RS04280	0.72	-0.5
1,035,838	-		CA265_RS04280	0.72	+0.4
1,035,841	+		CA265_RS04280	0.72	-0.5
1,035,940	+		CA265_RS04280	0.85	-0.4
1,035,993	+				+0.6
1,035,993	+				+0.4
1,036,094	-				+0.0
1,036,096	+				-0.1
1,036,103	+				-0.4