Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04260

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
1,030,311	-		CA265_RS04245	0.12	-0.5
1,030,328	-		CA265_RS04245	0.19	-0.1
1,030,328	-		CA265_RS04245	0.19	-0.3
1,030,372	+		CA265_RS04245	0.37	+1.0
1,030,567	-				+0.9
1,030,579	+				+0.2
1,030,579	+				-0.0
1,030,579	+				-0.9
1,030,580	-				-1.3
1,030,613	+				+0.4
1,030,621	+				-0.3
1,030,833	+				-0.4
1,030,929	-				-0.6
1,031,096	+				-0.0
1,031,097	-				-2.2
1,031,187	+				+0.0
1,031,188	-				-0.8
1,031,240	-				-0.8
1,031,240	-				+0.5
1,031,242	+				-1.1
1,031,243	-				-0.9
1,031,245	-				+0.8
1,031,245	-				-0.4
1,031,287	+				-1.0
1,031,287	+				-1.3
1,031,377	+				-1.0
1,031,391	-				-0.3
1,031,428	-		CA265_RS04260	0.13	-1.6
1,031,446	+		CA265_RS04260	0.14	-0.8
1,031,479	+		CA265_RS04260	0.16	-1.1
1,031,479	+		CA265_RS04260	0.16	-0.9
1,031,480	-		CA265_RS04260	0.17	-1.3
1,031,483	+		CA265_RS04260	0.17	-0.1
1,031,531	+		CA265_RS04260	0.20	-1.0
1,031,556	-		CA265_RS04260	0.22	-1.2
1,031,633	+		CA265_RS04260	0.28	-0.7
1,031,640	-		CA265_RS04260	0.28	-0.4
1,031,660	+		CA265_RS04260	0.30	-0.2
1,031,718	-		CA265_RS04260	0.34	-0.2
1,031,814	-		CA265_RS04260	0.41	-0.3
1,031,852	+		CA265_RS04260	0.44	-1.3
1,031,901	-		CA265_RS04260	0.48	-0.5
1,031,924	-		CA265_RS04260	0.49	-0.1
1,032,026	-		CA265_RS04260	0.57	-2.3
1,032,065	-		CA265_RS04260	0.60	-1.6
1,032,065	-		CA265_RS04260	0.60	-1.5
1,032,077	+		CA265_RS04260	0.61	-0.1
1,032,079	-		CA265_RS04260	0.61	-0.7
1,032,160	+		CA265_RS04260	0.67	-0.3
1,032,282	+		CA265_RS04260	0.76	-1.8
1,032,283	-		CA265_RS04260	0.76	-0.7
1,032,370	+		CA265_RS04260	0.82	+0.0
1,032,371	-		CA265_RS04260	0.82	-0.4
1,032,415	-		CA265_RS04260	0.86	-1.1
1,032,415	-		CA265_RS04260	0.86	-0.6
1,032,453	+		CA265_RS04260	0.88	+0.8
1,032,454	-		CA265_RS04260	0.89	-0.7
1,032,508	+				-0.3
1,032,509	-				-1.3
1,032,509	-				-1.5
1,032,553	+				-0.9
1,032,574	-				-0.3
1,032,630	-				+0.2
1,032,641	-				+0.3
1,032,642	+				+0.4
1,032,642	+				-0.7
1,032,690	-				-0.1
1,032,690	-				-1.1
1,032,705	+		CA265_RS04265	0.12	+0.3
1,032,707	+		CA265_RS04265	0.13	-0.0
1,032,707	+		CA265_RS04265	0.13	+0.6
1,032,720	+		CA265_RS04265	0.17	+1.1
1,032,725	+		CA265_RS04265	0.18	-0.5
1,032,803	+		CA265_RS04265	0.40	-0.1
1,032,803	+		CA265_RS04265	0.40	-0.5
1,032,804	-		CA265_RS04265	0.40	+1.1
1,032,808	-		CA265_RS04265	0.41	-1.1
1,032,834	+		CA265_RS04265	0.48	+0.1
1,032,840	+		CA265_RS04265	0.50	+0.4
1,032,957	-		CA265_RS04265	0.83	+0.8
1,032,978	-		CA265_RS04265	0.89	-0.1
1,033,053	-				-0.6
1,033,078	-				-1.3
1,033,111	+				-1.4