Experiment: R2A with Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03990 and CA265_RS03995 are separated by 32 nucleotides CA265_RS03995 and CA265_RS04000 are separated by 197 nucleotides CA265_RS04000 and CA265_RS04005 are separated by 47 nucleotides
CA265_RS03990: CA265_RS03990 - hypothetical protein, at 953,290 to 954,990
_RS03990
CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654
_RS03995
CA265_RS04000: CA265_RS04000 - hypothetical protein, at 956,852 to 957,172
_RS04000
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.084 kb on - strand, within CA265_RS03990 at 954.084 kb on - strand, within CA265_RS03990 at 954.085 kb on + strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.130 kb on - strand, within CA265_RS03990 at 954.132 kb on + strand, within CA265_RS03990 at 954.151 kb on - strand, within CA265_RS03990 at 954.270 kb on - strand, within CA265_RS03990 at 954.274 kb on - strand, within CA265_RS03990 at 954.287 kb on + strand, within CA265_RS03990 at 954.297 kb on + strand, within CA265_RS03990 at 954.298 kb on - strand, within CA265_RS03990 at 954.381 kb on + strand, within CA265_RS03990 at 954.476 kb on + strand, within CA265_RS03990 at 954.485 kb on - strand, within CA265_RS03990 at 954.497 kb on + strand, within CA265_RS03990 at 954.502 kb on - strand, within CA265_RS03990 at 954.505 kb on - strand, within CA265_RS03990 at 954.517 kb on - strand, within CA265_RS03990 at 954.528 kb on + strand, within CA265_RS03990 at 954.528 kb on + strand, within CA265_RS03990 at 954.536 kb on + strand, within CA265_RS03990 at 954.536 kb on + strand, within CA265_RS03990 at 954.601 kb on + strand, within CA265_RS03990 at 954.601 kb on + strand, within CA265_RS03990 at 954.675 kb on + strand, within CA265_RS03990 at 954.747 kb on - strand, within CA265_RS03990 at 954.751 kb on - strand, within CA265_RS03990 at 954.751 kb on - strand, within CA265_RS03990 at 954.762 kb on + strand, within CA265_RS03990 at 954.763 kb on - strand, within CA265_RS03990 at 954.793 kb on + strand, within CA265_RS03990 at 954.794 kb on - strand, within CA265_RS03990 at 954.797 kb on + strand, within CA265_RS03990 at 954.797 kb on + strand, within CA265_RS03990 at 954.819 kb on - strand, within CA265_RS03990 at 954.820 kb on + strand, within CA265_RS03990 at 954.850 kb on - strand at 954.850 kb on - strand at 954.887 kb on + strand at 954.888 kb on - strand at 954.904 kb on + strand at 954.956 kb on - strand at 955.073 kb on + strand at 955.077 kb on - strand at 955.103 kb on + strand at 955.116 kb on - strand at 955.116 kb on - strand at 955.122 kb on - strand at 955.122 kb on - strand at 955.124 kb on - strand at 955.124 kb on - strand at 955.199 kb on + strand, within CA265_RS03995 at 955.213 kb on + strand, within CA265_RS03995 at 955.307 kb on - strand, within CA265_RS03995 at 955.452 kb on + strand, within CA265_RS03995 at 955.455 kb on - strand, within CA265_RS03995 at 955.480 kb on + strand, within CA265_RS03995 at 955.712 kb on - strand, within CA265_RS03995 at 955.756 kb on + strand, within CA265_RS03995 at 955.756 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.793 kb on - strand, within CA265_RS03995 at 955.822 kb on - strand, within CA265_RS03995 at 955.822 kb on - strand, within CA265_RS03995 at 955.832 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.892 kb on - strand, within CA265_RS03995 at 955.996 kb on + strand, within CA265_RS03995 at 956.014 kb on - strand, within CA265_RS03995 at 956.048 kb on - strand, within CA265_RS03995 at 956.064 kb on - strand, within CA265_RS03995 at 956.198 kb on - strand, within CA265_RS03995 at 956.206 kb on + strand, within CA265_RS03995 at 956.207 kb on - strand at 956.313 kb on - strand, within CA265_RS03995 at 956.313 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.346 kb on + strand, within CA265_RS03995 at 956.381 kb on - strand, within CA265_RS03995 at 956.517 kb on + strand at 956.518 kb on - strand at 956.522 kb on + strand at 956.586 kb on + strand at 956.599 kb on - strand at 956.632 kb on + strand at 956.673 kb on - strand at 956.730 kb on + strand at 956.764 kb on - strand at 956.790 kb on - strand at 956.802 kb on + strand at 956.813 kb on + strand at 956.947 kb on + strand, within CA265_RS04000 at 956.970 kb on + strand, within CA265_RS04000 at 957.053 kb on + strand, within CA265_RS04000 at 957.056 kb on + strand, within CA265_RS04000 at 957.078 kb on + strand, within CA265_RS04000 at 957.146 kb on - strand at 957.149 kb on + strand at 957.156 kb on - strand at 957.156 kb on - strand at 957.164 kb on - strand at 957.171 kb on - strand at 957.188 kb on + strand at 957.189 kb on - strand at 957.201 kb on - strand at 957.227 kb on - strand at 957.275 kb on + strand at 957.276 kb on - strand at 957.300 kb on - strand at 957.357 kb on - strand at 957.415 kb on + strand, within CA265_RS04005 at 957.417 kb on + strand, within CA265_RS04005 at 957.445 kb on - strand, within CA265_RS04005 at 957.516 kb on - strand, within CA265_RS04005 at 957.543 kb on - strand, within CA265_RS04005 at 957.546 kb on + strand, within CA265_RS04005 at 957.570 kb on - strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.585 kb on - strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.611 kb on - strand, within CA265_RS04005 at 957.625 kb on + strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.634 kb on - strand, within CA265_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Neomycin 0.004 mg/ml remove 954,084 - CA265_RS03990 0.47 +0.3 954,084 - CA265_RS03990 0.47 +0.4 954,085 + CA265_RS03990 0.47 +0.0 954,086 - CA265_RS03990 0.47 +0.8 954,086 - CA265_RS03990 0.47 -1.1 954,086 - CA265_RS03990 0.47 +0.5 954,086 - CA265_RS03990 0.47 -0.4 954,130 - CA265_RS03990 0.49 -0.2 954,132 + CA265_RS03990 0.50 -0.8 954,151 - CA265_RS03990 0.51 +1.3 954,270 - CA265_RS03990 0.58 +1.3 954,274 - CA265_RS03990 0.58 +0.6 954,287 + CA265_RS03990 0.59 +0.1 954,297 + CA265_RS03990 0.59 -0.9 954,298 - CA265_RS03990 0.59 -0.3 954,381 + CA265_RS03990 0.64 +1.3 954,476 + CA265_RS03990 0.70 +0.0 954,485 - CA265_RS03990 0.70 +0.1 954,497 + CA265_RS03990 0.71 +0.7 954,502 - CA265_RS03990 0.71 -0.3 954,505 - CA265_RS03990 0.71 +1.6 954,517 - CA265_RS03990 0.72 +0.1 954,528 + CA265_RS03990 0.73 -0.0 954,528 + CA265_RS03990 0.73 -0.4 954,536 + CA265_RS03990 0.73 -0.5 954,536 + CA265_RS03990 0.73 -0.1 954,601 + CA265_RS03990 0.77 +0.2 954,601 + CA265_RS03990 0.77 +0.4 954,675 + CA265_RS03990 0.81 -0.6 954,747 - CA265_RS03990 0.86 -1.9 954,751 - CA265_RS03990 0.86 +0.4 954,751 - CA265_RS03990 0.86 +0.4 954,762 + CA265_RS03990 0.87 -0.1 954,763 - CA265_RS03990 0.87 +0.2 954,793 + CA265_RS03990 0.88 -0.1 954,794 - CA265_RS03990 0.88 +0.1 954,797 + CA265_RS03990 0.89 +1.3 954,797 + CA265_RS03990 0.89 +0.2 954,819 - CA265_RS03990 0.90 -0.9 954,820 + CA265_RS03990 0.90 +0.2 954,850 - -0.1 954,850 - -0.3 954,887 + -0.3 954,888 - -1.2 954,904 + -0.7 954,956 - +0.8 955,073 + -0.7 955,077 - +0.4 955,103 + -0.3 955,116 - -0.4 955,116 - -0.1 955,122 - -0.1 955,122 - -1.6 955,124 - -0.2 955,124 - -0.0 955,199 + CA265_RS03995 0.11 +0.4 955,213 + CA265_RS03995 0.12 +0.0 955,307 - CA265_RS03995 0.17 -0.5 955,452 + CA265_RS03995 0.26 +1.3 955,455 - CA265_RS03995 0.26 -0.2 955,480 + CA265_RS03995 0.28 +0.3 955,712 - CA265_RS03995 0.42 +0.1 955,756 + CA265_RS03995 0.45 -0.2 955,756 + CA265_RS03995 0.45 +0.4 955,766 + CA265_RS03995 0.46 -0.1 955,766 + CA265_RS03995 0.46 +0.9 955,766 + CA265_RS03995 0.46 +0.5 955,793 - CA265_RS03995 0.47 +0.3 955,822 - CA265_RS03995 0.49 +2.1 955,822 - CA265_RS03995 0.49 -1.1 955,832 - CA265_RS03995 0.50 -0.1 955,864 - CA265_RS03995 0.52 +0.4 955,864 - CA265_RS03995 0.52 +0.3 955,864 - CA265_RS03995 0.52 -0.4 955,892 - CA265_RS03995 0.53 -0.0 955,996 + CA265_RS03995 0.60 -1.2 956,014 - CA265_RS03995 0.61 +0.5 956,048 - CA265_RS03995 0.63 +0.3 956,064 - CA265_RS03995 0.64 +0.4 956,198 - CA265_RS03995 0.72 +1.1 956,206 + CA265_RS03995 0.72 -0.3 956,207 - -1.7 956,313 - CA265_RS03995 0.79 +0.4 956,313 - CA265_RS03995 0.79 -2.1 956,336 - CA265_RS03995 0.80 +0.5 956,336 - CA265_RS03995 0.80 -0.4 956,340 - CA265_RS03995 0.81 +0.1 956,340 - CA265_RS03995 0.81 -0.1 956,346 + CA265_RS03995 0.81 -0.4 956,381 - CA265_RS03995 0.83 +0.4 956,517 + -0.6 956,518 - +0.1 956,522 + +1.1 956,586 + +0.3 956,599 - +0.4 956,632 + -0.3 956,673 - +0.7 956,730 + -0.6 956,764 - +0.2 956,790 - +0.2 956,802 + -0.5 956,813 + +0.3 956,947 + CA265_RS04000 0.30 -0.6 956,970 + CA265_RS04000 0.37 +0.8 957,053 + CA265_RS04000 0.63 +1.3 957,056 + CA265_RS04000 0.64 -1.4 957,078 + CA265_RS04000 0.70 -0.2 957,146 - +0.1 957,149 + -0.3 957,156 - -0.3 957,156 - +0.3 957,164 - +0.1 957,171 - +0.0 957,188 + +0.6 957,189 - +0.3 957,201 - +0.0 957,227 - -0.6 957,275 + +0.9 957,276 - +0.0 957,300 - -0.6 957,357 - +0.5 957,415 + CA265_RS04005 0.12 +0.3 957,417 + CA265_RS04005 0.13 -0.6 957,445 - CA265_RS04005 0.14 -0.4 957,516 - CA265_RS04005 0.19 +0.1 957,543 - CA265_RS04005 0.21 +0.4 957,546 + CA265_RS04005 0.21 +0.4 957,570 - CA265_RS04005 0.22 -0.0 957,584 + CA265_RS04005 0.23 -0.1 957,584 + CA265_RS04005 0.23 +0.6 957,584 + CA265_RS04005 0.23 +0.1 957,584 + CA265_RS04005 0.23 +0.9 957,584 + CA265_RS04005 0.23 -0.1 957,585 - CA265_RS04005 0.23 +0.2 957,589 + CA265_RS04005 0.24 +0.0 957,589 + CA265_RS04005 0.24 +0.7 957,611 - CA265_RS04005 0.25 -0.8 957,625 + CA265_RS04005 0.26 -1.2 957,626 - CA265_RS04005 0.26 -0.8 957,626 - CA265_RS04005 0.26 +0.2 957,634 - CA265_RS04005 0.27 -0.2
Or see this region's nucleotide sequence