Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03595

Experiment: R2A with Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03585 and CA265_RS03590 are separated by 323 nucleotidesCA265_RS03590 and CA265_RS03595 are separated by 110 nucleotidesCA265_RS03595 and CA265_RS03600 are separated by 107 nucleotides CA265_RS03585: CA265_RS03585 - ferredoxin, at 859,484 to 859,834 _RS03585 CA265_RS03590: CA265_RS03590 - universal stress protein, at 860,158 to 860,610 _RS03590 CA265_RS03595: CA265_RS03595 - hydrolase, at 860,721 to 861,506 _RS03595 CA265_RS03600: CA265_RS03600 - hypothetical protein, at 861,614 to 862,513 _RS03600 Position (kb) 860 861 862Strain fitness (log2 ratio) -2 -1 0 1at 859.841 kb on - strandat 859.964 kb on - strandat 859.964 kb on - strandat 859.990 kb on + strandat 859.990 kb on + strandat 860.023 kb on + strandat 860.024 kb on - strandat 860.083 kb on + strandat 860.136 kb on + strandat 860.137 kb on - strandat 860.159 kb on + strandat 860.209 kb on - strand, within CA265_RS03590at 860.209 kb on - strand, within CA265_RS03590at 860.316 kb on + strand, within CA265_RS03590at 860.344 kb on - strand, within CA265_RS03590at 860.347 kb on + strand, within CA265_RS03590at 860.348 kb on - strand, within CA265_RS03590at 860.348 kb on - strand, within CA265_RS03590at 860.351 kb on + strand, within CA265_RS03590at 860.371 kb on - strand, within CA265_RS03590at 860.403 kb on + strand, within CA265_RS03590at 860.430 kb on - strand, within CA265_RS03590at 860.470 kb on + strand, within CA265_RS03590at 860.497 kb on - strand, within CA265_RS03590at 860.510 kb on - strand, within CA265_RS03590at 860.510 kb on - strand, within CA265_RS03590at 860.572 kb on - strandat 860.575 kb on - strandat 860.575 kb on - strandat 860.575 kb on - strandat 860.575 kb on - strandat 860.619 kb on + strandat 860.682 kb on - strandat 860.682 kb on - strandat 860.718 kb on + strandat 860.718 kb on + strandat 860.719 kb on - strandat 860.756 kb on - strandat 860.756 kb on - strandat 860.824 kb on + strand, within CA265_RS03595at 860.831 kb on + strand, within CA265_RS03595at 861.080 kb on + strand, within CA265_RS03595at 861.099 kb on + strand, within CA265_RS03595at 861.169 kb on - strand, within CA265_RS03595at 861.200 kb on - strand, within CA265_RS03595at 861.245 kb on + strand, within CA265_RS03595at 861.246 kb on - strand, within CA265_RS03595at 861.371 kb on + strand, within CA265_RS03595at 861.449 kb on + strandat 861.450 kb on - strandat 861.486 kb on - strandat 861.504 kb on + strandat 861.504 kb on + strandat 861.505 kb on - strandat 861.507 kb on + strandat 861.551 kb on - strandat 861.551 kb on - strandat 861.554 kb on - strandat 861.603 kb on + strandat 861.607 kb on - strandat 861.886 kb on - strand, within CA265_RS03600at 861.908 kb on + strand, within CA265_RS03600at 861.939 kb on + strand, within CA265_RS03600at 861.940 kb on - strand, within CA265_RS03600at 861.940 kb on - strand, within CA265_RS03600at 861.970 kb on + strand, within CA265_RS03600at 862.004 kb on + strand, within CA265_RS03600at 862.048 kb on + strand, within CA265_RS03600at 862.049 kb on - strand, within CA265_RS03600at 862.049 kb on - strand, within CA265_RS03600at 862.075 kb on + strand, within CA265_RS03600at 862.107 kb on + strand, within CA265_RS03600at 862.214 kb on + strand, within CA265_RS03600at 862.214 kb on + strand, within CA265_RS03600at 862.297 kb on + strand, within CA265_RS03600at 862.321 kb on + strand, within CA265_RS03600at 862.322 kb on - strand, within CA265_RS03600at 862.334 kb on + strandat 862.335 kb on - strand, within CA265_RS03600at 862.387 kb on + strand, within CA265_RS03600at 862.388 kb on - strand, within CA265_RS03600at 862.391 kb on + strand, within CA265_RS03600at 862.392 kb on - strand, within CA265_RS03600at 862.404 kb on - strand, within CA265_RS03600

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Neomycin 0.004 mg/ml
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859,841 - -0.2
859,964 - -0.4
859,964 - +0.7
859,990 + +0.1
859,990 + -0.0
860,023 + +0.5
860,024 - +0.1
860,083 + +0.2
860,136 + +0.1
860,137 - +0.8
860,159 + -0.1
860,209 - CA265_RS03590 0.11 -0.1
860,209 - CA265_RS03590 0.11 -0.2
860,316 + CA265_RS03590 0.35 -0.4
860,344 - CA265_RS03590 0.41 -0.2
860,347 + CA265_RS03590 0.42 -0.1
860,348 - CA265_RS03590 0.42 -0.0
860,348 - CA265_RS03590 0.42 -0.3
860,351 + CA265_RS03590 0.43 +0.4
860,371 - CA265_RS03590 0.47 -1.1
860,403 + CA265_RS03590 0.54 +0.1
860,430 - CA265_RS03590 0.60 -0.3
860,470 + CA265_RS03590 0.69 +0.2
860,497 - CA265_RS03590 0.75 -2.6
860,510 - CA265_RS03590 0.78 -0.5
860,510 - CA265_RS03590 0.78 -0.2
860,572 - +0.8
860,575 - -0.7
860,575 - -0.5
860,575 - +0.1
860,575 - -1.3
860,619 + +0.3
860,682 - +0.1
860,682 - -0.1
860,718 + +0.3
860,718 + +0.1
860,719 - +0.0
860,756 - -0.1
860,756 - -0.5
860,824 + CA265_RS03595 0.13 +0.3
860,831 + CA265_RS03595 0.14 +1.3
861,080 + CA265_RS03595 0.46 -0.5
861,099 + CA265_RS03595 0.48 -2.3
861,169 - CA265_RS03595 0.57 -1.2
861,200 - CA265_RS03595 0.61 -1.1
861,245 + CA265_RS03595 0.67 +0.3
861,246 - CA265_RS03595 0.67 -0.5
861,371 + CA265_RS03595 0.83 -0.5
861,449 + +0.3
861,450 - +0.3
861,486 - -0.7
861,504 + +1.1
861,504 + +1.3
861,505 - +0.4
861,507 + +0.0
861,551 - +0.4
861,551 - -0.7
861,554 - +0.3
861,603 + +0.9
861,607 - -1.2
861,886 - CA265_RS03600 0.30 +0.5
861,908 + CA265_RS03600 0.33 -0.9
861,939 + CA265_RS03600 0.36 +0.7
861,940 - CA265_RS03600 0.36 -0.4
861,940 - CA265_RS03600 0.36 -0.1
861,970 + CA265_RS03600 0.40 +0.5
862,004 + CA265_RS03600 0.43 -0.3
862,048 + CA265_RS03600 0.48 +0.7
862,049 - CA265_RS03600 0.48 +0.2
862,049 - CA265_RS03600 0.48 -0.7
862,075 + CA265_RS03600 0.51 +0.3
862,107 + CA265_RS03600 0.55 -1.6
862,214 + CA265_RS03600 0.67 -0.5
862,214 + CA265_RS03600 0.67 -0.8
862,297 + CA265_RS03600 0.76 -0.7
862,321 + CA265_RS03600 0.79 +0.2
862,322 - CA265_RS03600 0.79 -0.9
862,334 + +0.3
862,335 - CA265_RS03600 0.80 +0.2
862,387 + CA265_RS03600 0.86 -0.5
862,388 - CA265_RS03600 0.86 -0.2
862,391 + CA265_RS03600 0.86 -0.1
862,392 - CA265_RS03600 0.86 -0.1
862,404 - CA265_RS03600 0.88 +0.0

Or see this region's nucleotide sequence