Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01360

Experiment: R2A with Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01355 and CA265_RS01360 overlap by 1 nucleotidesCA265_RS01360 and CA265_RS01365 are separated by 11 nucleotides CA265_RS01355: CA265_RS01355 - hypothetical protein, at 341,691 to 342,119 _RS01355 CA265_RS01360: CA265_RS01360 - oxygen-independent coproporphyrinogen III oxidase, at 342,119 to 343,465 _RS01360 CA265_RS01365: CA265_RS01365 - heavy metal translocating P-type ATPase, at 343,477 to 345,861 _RS01365 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1at 341.121 kb on - strandat 341.155 kb on - strandat 341.174 kb on + strandat 341.300 kb on + strandat 341.404 kb on - strandat 341.523 kb on - strandat 341.558 kb on + strandat 341.558 kb on + strandat 341.655 kb on - strandat 341.699 kb on + strandat 341.700 kb on - strandat 341.701 kb on + strandat 341.706 kb on + strandat 341.706 kb on + strandat 341.707 kb on - strandat 341.707 kb on - strandat 341.709 kb on - strandat 341.709 kb on - strandat 341.741 kb on - strand, within CA265_RS01355at 341.789 kb on - strand, within CA265_RS01355at 341.843 kb on + strand, within CA265_RS01355at 341.844 kb on - strand, within CA265_RS01355at 341.899 kb on - strand, within CA265_RS01355at 341.902 kb on + strand, within CA265_RS01355at 341.903 kb on - strand, within CA265_RS01355at 341.962 kb on + strand, within CA265_RS01355at 342.005 kb on + strand, within CA265_RS01355at 342.098 kb on + strandat 342.118 kb on - strandat 342.167 kb on + strandat 342.167 kb on + strandat 342.255 kb on + strand, within CA265_RS01360at 342.255 kb on + strand, within CA265_RS01360at 342.255 kb on + strand, within CA265_RS01360at 342.274 kb on - strand, within CA265_RS01360at 342.279 kb on + strand, within CA265_RS01360at 342.281 kb on + strand, within CA265_RS01360at 342.281 kb on + strand, within CA265_RS01360at 342.282 kb on - strand, within CA265_RS01360at 342.309 kb on + strand, within CA265_RS01360at 342.317 kb on + strand, within CA265_RS01360at 342.317 kb on + strand, within CA265_RS01360at 342.318 kb on - strand, within CA265_RS01360at 342.318 kb on - strand, within CA265_RS01360at 342.368 kb on + strand, within CA265_RS01360at 342.369 kb on - strand, within CA265_RS01360at 342.369 kb on - strand, within CA265_RS01360at 342.441 kb on + strand, within CA265_RS01360at 342.441 kb on + strand, within CA265_RS01360at 342.441 kb on + strand, within CA265_RS01360at 342.488 kb on - strand, within CA265_RS01360at 342.509 kb on - strand, within CA265_RS01360at 342.537 kb on + strand, within CA265_RS01360at 342.537 kb on + strand, within CA265_RS01360at 342.538 kb on - strand, within CA265_RS01360at 342.571 kb on + strand, within CA265_RS01360at 342.571 kb on + strand, within CA265_RS01360at 342.595 kb on - strand, within CA265_RS01360at 342.630 kb on + strand, within CA265_RS01360at 342.630 kb on + strand, within CA265_RS01360at 342.631 kb on - strand, within CA265_RS01360at 342.705 kb on + strand, within CA265_RS01360at 342.753 kb on - strand, within CA265_RS01360at 342.805 kb on + strand, within CA265_RS01360at 342.806 kb on - strand, within CA265_RS01360at 342.811 kb on + strand, within CA265_RS01360at 342.842 kb on + strand, within CA265_RS01360at 342.926 kb on + strand, within CA265_RS01360at 342.965 kb on - strand, within CA265_RS01360at 343.056 kb on - strand, within CA265_RS01360at 343.077 kb on + strand, within CA265_RS01360at 343.154 kb on + strand, within CA265_RS01360at 343.155 kb on - strand, within CA265_RS01360at 343.180 kb on - strand, within CA265_RS01360at 343.180 kb on - strand, within CA265_RS01360at 343.227 kb on + strand, within CA265_RS01360at 343.237 kb on + strand, within CA265_RS01360at 343.237 kb on + strand, within CA265_RS01360at 343.238 kb on - strand, within CA265_RS01360at 343.243 kb on + strand, within CA265_RS01360at 343.243 kb on + strand, within CA265_RS01360at 343.244 kb on - strand, within CA265_RS01360at 343.246 kb on + strand, within CA265_RS01360at 343.247 kb on - strand, within CA265_RS01360at 343.247 kb on - strand, within CA265_RS01360at 343.255 kb on + strand, within CA265_RS01360at 343.264 kb on + strand, within CA265_RS01360at 343.265 kb on - strand, within CA265_RS01360at 343.271 kb on + strand, within CA265_RS01360at 343.318 kb on - strand, within CA265_RS01360at 343.386 kb on + strandat 343.419 kb on + strandat 343.427 kb on - strandat 343.554 kb on + strandat 343.554 kb on + strandat 343.555 kb on - strandat 343.555 kb on - strandat 343.555 kb on - strandat 343.564 kb on - strandat 343.587 kb on + strandat 343.588 kb on - strandat 343.639 kb on + strandat 343.639 kb on + strandat 343.665 kb on + strandat 343.729 kb on - strand, within CA265_RS01365at 343.749 kb on + strand, within CA265_RS01365at 343.752 kb on + strand, within CA265_RS01365at 343.760 kb on - strand, within CA265_RS01365at 343.761 kb on + strand, within CA265_RS01365at 343.812 kb on + strand, within CA265_RS01365at 343.813 kb on - strand, within CA265_RS01365at 343.830 kb on - strand, within CA265_RS01365at 343.830 kb on - strand, within CA265_RS01365at 343.830 kb on - strand, within CA265_RS01365at 343.830 kb on - strand, within CA265_RS01365at 343.871 kb on + strand, within CA265_RS01365at 343.871 kb on + strand, within CA265_RS01365at 343.962 kb on - strand, within CA265_RS01365at 343.990 kb on - strand, within CA265_RS01365at 344.034 kb on + strand, within CA265_RS01365at 344.039 kb on + strand, within CA265_RS01365at 344.039 kb on + strand, within CA265_RS01365at 344.062 kb on + strand, within CA265_RS01365at 344.187 kb on + strand, within CA265_RS01365at 344.200 kb on - strand, within CA265_RS01365at 344.353 kb on + strand, within CA265_RS01365at 344.353 kb on + strand, within CA265_RS01365at 344.418 kb on - strand, within CA265_RS01365

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Neomycin 0.004 mg/ml
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341,121 - +0.3
341,155 - -0.0
341,174 + -0.3
341,300 + -0.1
341,404 - -0.2
341,523 - -0.1
341,558 + -0.1
341,558 + +1.2
341,655 - +0.2
341,699 + -0.1
341,700 - +0.9
341,701 + -0.7
341,706 + -0.8
341,706 + -0.8
341,707 - -0.1
341,707 - -0.5
341,709 - -0.0
341,709 - -1.0
341,741 - CA265_RS01355 0.12 -1.2
341,789 - CA265_RS01355 0.23 -1.1
341,843 + CA265_RS01355 0.35 -0.1
341,844 - CA265_RS01355 0.36 -0.5
341,899 - CA265_RS01355 0.48 +0.2
341,902 + CA265_RS01355 0.49 -0.7
341,903 - CA265_RS01355 0.49 -0.4
341,962 + CA265_RS01355 0.63 +0.0
342,005 + CA265_RS01355 0.73 +0.8
342,098 + -0.3
342,118 - +0.2
342,167 + -0.7
342,167 + -0.4
342,255 + CA265_RS01360 0.10 -0.1
342,255 + CA265_RS01360 0.10 -0.1
342,255 + CA265_RS01360 0.10 -0.4
342,274 - CA265_RS01360 0.12 +0.3
342,279 + CA265_RS01360 0.12 +0.3
342,281 + CA265_RS01360 0.12 -0.4
342,281 + CA265_RS01360 0.12 -0.4
342,282 - CA265_RS01360 0.12 -0.1
342,309 + CA265_RS01360 0.14 -0.6
342,317 + CA265_RS01360 0.15 +0.1
342,317 + CA265_RS01360 0.15 -2.4
342,318 - CA265_RS01360 0.15 +0.4
342,318 - CA265_RS01360 0.15 +0.1
342,368 + CA265_RS01360 0.18 -0.4
342,369 - CA265_RS01360 0.19 -0.1
342,369 - CA265_RS01360 0.19 +0.2
342,441 + CA265_RS01360 0.24 +0.2
342,441 + CA265_RS01360 0.24 -0.6
342,441 + CA265_RS01360 0.24 +0.0
342,488 - CA265_RS01360 0.27 +0.4
342,509 - CA265_RS01360 0.29 +0.9
342,537 + CA265_RS01360 0.31 -0.2
342,537 + CA265_RS01360 0.31 -0.0
342,538 - CA265_RS01360 0.31 +0.4
342,571 + CA265_RS01360 0.34 +0.0
342,571 + CA265_RS01360 0.34 +0.0
342,595 - CA265_RS01360 0.35 -0.5
342,630 + CA265_RS01360 0.38 +0.5
342,630 + CA265_RS01360 0.38 -0.1
342,631 - CA265_RS01360 0.38 -0.3
342,705 + CA265_RS01360 0.44 +0.2
342,753 - CA265_RS01360 0.47 -0.4
342,805 + CA265_RS01360 0.51 -0.3
342,806 - CA265_RS01360 0.51 -1.1
342,811 + CA265_RS01360 0.51 +0.5
342,842 + CA265_RS01360 0.54 -1.1
342,926 + CA265_RS01360 0.60 +0.1
342,965 - CA265_RS01360 0.63 +0.3
343,056 - CA265_RS01360 0.70 +0.3
343,077 + CA265_RS01360 0.71 +0.2
343,154 + CA265_RS01360 0.77 +0.6
343,155 - CA265_RS01360 0.77 +0.0
343,180 - CA265_RS01360 0.79 -0.0
343,180 - CA265_RS01360 0.79 +0.5
343,227 + CA265_RS01360 0.82 -0.8
343,237 + CA265_RS01360 0.83 -0.9
343,237 + CA265_RS01360 0.83 +0.1
343,238 - CA265_RS01360 0.83 +0.4
343,243 + CA265_RS01360 0.83 -0.2
343,243 + CA265_RS01360 0.83 -0.9
343,244 - CA265_RS01360 0.84 -0.7
343,246 + CA265_RS01360 0.84 -0.5
343,247 - CA265_RS01360 0.84 +0.3
343,247 - CA265_RS01360 0.84 +0.2
343,255 + CA265_RS01360 0.84 -0.7
343,264 + CA265_RS01360 0.85 -0.2
343,265 - CA265_RS01360 0.85 +0.6
343,271 + CA265_RS01360 0.86 -0.4
343,318 - CA265_RS01360 0.89 +1.1
343,386 + -1.4
343,419 + -0.4
343,427 - -0.6
343,554 + +1.7
343,554 + +0.4
343,555 - -0.3
343,555 - -0.0
343,555 - +0.7
343,564 - +0.1
343,587 + +0.2
343,588 - +1.4
343,639 + -0.7
343,639 + -0.3
343,665 + +0.6
343,729 - CA265_RS01365 0.11 -0.1
343,749 + CA265_RS01365 0.11 -0.3
343,752 + CA265_RS01365 0.12 -0.2
343,760 - CA265_RS01365 0.12 +0.1
343,761 + CA265_RS01365 0.12 +0.1
343,812 + CA265_RS01365 0.14 -0.7
343,813 - CA265_RS01365 0.14 -0.5
343,830 - CA265_RS01365 0.15 +0.1
343,830 - CA265_RS01365 0.15 +0.1
343,830 - CA265_RS01365 0.15 +0.1
343,830 - CA265_RS01365 0.15 +0.9
343,871 + CA265_RS01365 0.17 +0.5
343,871 + CA265_RS01365 0.17 -0.9
343,962 - CA265_RS01365 0.20 -0.5
343,990 - CA265_RS01365 0.22 -0.3
344,034 + CA265_RS01365 0.23 -0.3
344,039 + CA265_RS01365 0.24 -1.5
344,039 + CA265_RS01365 0.24 +0.9
344,062 + CA265_RS01365 0.25 -0.6
344,187 + CA265_RS01365 0.30 -0.2
344,200 - CA265_RS01365 0.30 +0.9
344,353 + CA265_RS01365 0.37 +0.6
344,353 + CA265_RS01365 0.37 -1.9
344,418 - CA265_RS01365 0.39 -0.4

Or see this region's nucleotide sequence