Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00665

Experiment: R2A with Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00660 and CA265_RS00665 are separated by 8 nucleotidesCA265_RS00665 and CA265_RS00670 are separated by 494 nucleotides CA265_RS00660: CA265_RS00660 - uvrA paralog in Bacteroidetes (from data), at 148,916 to 151,729 _RS00660 CA265_RS00665: CA265_RS00665 - lysine transporter LysE, at 151,738 to 152,391 _RS00665 CA265_RS00670: CA265_RS00670 - metallophosphoesterase, at 152,886 to 153,728 _RS00670 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 150.763 kb on + strand, within CA265_RS00660at 150.801 kb on + strand, within CA265_RS00660at 150.802 kb on - strand, within CA265_RS00660at 150.905 kb on + strand, within CA265_RS00660at 150.906 kb on - strand, within CA265_RS00660at 150.927 kb on - strand, within CA265_RS00660at 150.946 kb on - strand, within CA265_RS00660at 151.001 kb on + strand, within CA265_RS00660at 151.002 kb on - strand, within CA265_RS00660at 151.044 kb on + strand, within CA265_RS00660at 151.095 kb on + strand, within CA265_RS00660at 151.095 kb on + strand, within CA265_RS00660at 151.096 kb on - strand, within CA265_RS00660at 151.229 kb on + strand, within CA265_RS00660at 151.246 kb on - strand, within CA265_RS00660at 151.321 kb on - strand, within CA265_RS00660at 151.338 kb on + strand, within CA265_RS00660at 151.339 kb on - strand, within CA265_RS00660at 151.372 kb on + strand, within CA265_RS00660at 151.376 kb on - strand, within CA265_RS00660at 151.376 kb on - strand, within CA265_RS00660at 151.376 kb on - strand, within CA265_RS00660at 151.435 kb on + strand, within CA265_RS00660at 151.457 kb on - strandat 151.523 kb on - strandat 151.523 kb on - strandat 151.523 kb on - strandat 151.523 kb on - strandat 151.567 kb on + strandat 151.568 kb on - strandat 151.568 kb on - strandat 151.666 kb on - strandat 151.787 kb on - strandat 151.804 kb on - strand, within CA265_RS00665at 151.834 kb on - strand, within CA265_RS00665at 151.859 kb on - strand, within CA265_RS00665at 151.859 kb on - strand, within CA265_RS00665at 152.080 kb on - strand, within CA265_RS00665at 152.164 kb on + strand, within CA265_RS00665at 152.279 kb on - strand, within CA265_RS00665at 152.388 kb on - strandat 152.390 kb on - strandat 152.390 kb on - strandat 152.394 kb on + strandat 152.460 kb on + strandat 152.460 kb on + strandat 152.522 kb on + strandat 152.578 kb on + strandat 152.578 kb on + strandat 152.690 kb on - strandat 152.744 kb on - strandat 152.788 kb on - strandat 152.788 kb on - strandat 152.791 kb on + strandat 152.813 kb on + strandat 152.813 kb on + strandat 152.814 kb on - strandat 152.831 kb on + strandat 152.852 kb on + strandat 152.865 kb on + strandat 152.875 kb on - strandat 152.885 kb on + strandat 152.885 kb on + strandat 152.932 kb on + strandat 152.932 kb on + strandat 152.933 kb on - strandat 152.942 kb on + strandat 153.008 kb on + strand, within CA265_RS00670at 153.063 kb on + strand, within CA265_RS00670at 153.066 kb on - strand, within CA265_RS00670at 153.084 kb on - strand, within CA265_RS00670at 153.140 kb on + strand, within CA265_RS00670at 153.172 kb on + strand, within CA265_RS00670at 153.173 kb on - strand, within CA265_RS00670at 153.173 kb on - strand, within CA265_RS00670at 153.198 kb on + strand, within CA265_RS00670at 153.209 kb on + strand, within CA265_RS00670at 153.316 kb on + strand, within CA265_RS00670

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Neomycin 0.004 mg/ml
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150,763 + CA265_RS00660 0.66 -0.5
150,801 + CA265_RS00660 0.67 -2.2
150,802 - CA265_RS00660 0.67 -0.7
150,905 + CA265_RS00660 0.71 +0.3
150,906 - CA265_RS00660 0.71 -0.3
150,927 - CA265_RS00660 0.71 +0.6
150,946 - CA265_RS00660 0.72 +0.3
151,001 + CA265_RS00660 0.74 -2.0
151,002 - CA265_RS00660 0.74 -0.8
151,044 + CA265_RS00660 0.76 -0.0
151,095 + CA265_RS00660 0.77 -1.3
151,095 + CA265_RS00660 0.77 -0.3
151,096 - CA265_RS00660 0.77 -0.3
151,229 + CA265_RS00660 0.82 -0.1
151,246 - CA265_RS00660 0.83 -0.3
151,321 - CA265_RS00660 0.85 -0.0
151,338 + CA265_RS00660 0.86 -0.6
151,339 - CA265_RS00660 0.86 -0.1
151,372 + CA265_RS00660 0.87 -1.2
151,376 - CA265_RS00660 0.87 +0.1
151,376 - CA265_RS00660 0.87 +0.4
151,376 - CA265_RS00660 0.87 -0.0
151,435 + CA265_RS00660 0.90 -0.3
151,457 - +0.2
151,523 - +0.1
151,523 - +0.5
151,523 - -0.3
151,523 - +0.1
151,567 + -0.8
151,568 - +0.3
151,568 - +0.5
151,666 - +0.4
151,787 - +0.7
151,804 - CA265_RS00665 0.10 -1.0
151,834 - CA265_RS00665 0.15 -0.2
151,859 - CA265_RS00665 0.19 -1.4
151,859 - CA265_RS00665 0.19 -1.1
152,080 - CA265_RS00665 0.52 +0.2
152,164 + CA265_RS00665 0.65 -1.5
152,279 - CA265_RS00665 0.83 +0.3
152,388 - +0.6
152,390 - +0.2
152,390 - +0.5
152,394 + +0.3
152,460 + +0.5
152,460 + -0.1
152,522 + -0.7
152,578 + -0.1
152,578 + +0.8
152,690 - -1.3
152,744 - -0.3
152,788 - -0.0
152,788 - -0.7
152,791 + +0.0
152,813 + +0.1
152,813 + -0.1
152,814 - -0.5
152,831 + +0.4
152,852 + +1.3
152,865 + +0.3
152,875 - -0.5
152,885 + +0.3
152,885 + +0.3
152,932 + +0.4
152,932 + +0.3
152,933 - -1.2
152,942 + -1.1
153,008 + CA265_RS00670 0.14 -0.3
153,063 + CA265_RS00670 0.21 +0.0
153,066 - CA265_RS00670 0.21 -0.4
153,084 - CA265_RS00670 0.23 +0.5
153,140 + CA265_RS00670 0.30 +0.2
153,172 + CA265_RS00670 0.34 +0.6
153,173 - CA265_RS00670 0.34 +0.1
153,173 - CA265_RS00670 0.34 -0.6
153,198 + CA265_RS00670 0.37 +0.1
153,209 + CA265_RS00670 0.38 -0.4
153,316 + CA265_RS00670 0.51 -1.1

Or see this region's nucleotide sequence