Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_929

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_928 and Ac3H11_929 are separated by 90 nucleotidesAc3H11_929 and Ac3H11_930 are separated by 8 nucleotides Ac3H11_928 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 42,170 to 43,093 _928 Ac3H11_929 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 43,184 to 44,584 _929 Ac3H11_930 - hypothetical protein, at 44,593 to 45,345 _930 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 42.326 kb on + strand, within Ac3H11_928at 42.326 kb on + strand, within Ac3H11_928at 42.372 kb on + strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.553 kb on - strand, within Ac3H11_928at 42.553 kb on - strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.856 kb on - strand, within Ac3H11_928at 42.856 kb on - strand, within Ac3H11_928at 42.871 kb on + strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.882 kb on + strand, within Ac3H11_928at 42.882 kb on + strand, within Ac3H11_928at 42.883 kb on - strand, within Ac3H11_928at 42.915 kb on + strand, within Ac3H11_928at 42.915 kb on + strand, within Ac3H11_928at 42.916 kb on - strand, within Ac3H11_928at 42.916 kb on - strand, within Ac3H11_928at 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.066 kb on + strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.749 kb on + strand, within Ac3H11_929at 43.750 kb on - strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.151 kb on + strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.152 kb on - strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.154 kb on + strand, within Ac3H11_929at 44.155 kb on - strand, within Ac3H11_929at 44.441 kb on + strand, within Ac3H11_929at 44.441 kb on + strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.442 kb on - strand, within Ac3H11_929at 44.647 kb on - strandat 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.675 kb on + strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.676 kb on - strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.774 kb on + strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.775 kb on - strand, within Ac3H11_930at 44.977 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.071 kb on + strand, within Ac3H11_930at 45.132 kb on - strand, within Ac3H11_930at 45.373 kb on + strandat 45.374 kb on - strandat 45.421 kb on + strandat 45.421 kb on + strandat 45.422 kb on - strandat 45.457 kb on + strandat 45.458 kb on - strandat 45.458 kb on - strandat 45.467 kb on + strandat 45.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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42,326 + Ac3H11_928 0.17 -0.9
42,326 + Ac3H11_928 0.17 +0.3
42,372 + Ac3H11_928 0.22 +0.4
42,373 - Ac3H11_928 0.22 -2.0
42,373 - Ac3H11_928 0.22 -0.0
42,373 - Ac3H11_928 0.22 +0.9
42,534 + Ac3H11_928 0.39 +0.2
42,534 + Ac3H11_928 0.39 +0.2
42,534 + Ac3H11_928 0.39 +0.0
42,534 + Ac3H11_928 0.39 +0.8
42,534 + Ac3H11_928 0.39 -0.1
42,535 - Ac3H11_928 0.40 -0.1
42,535 - Ac3H11_928 0.40 +1.5
42,535 - Ac3H11_928 0.40 -0.7
42,535 - Ac3H11_928 0.40 +1.3
42,552 + Ac3H11_928 0.41 +0.0
42,552 + Ac3H11_928 0.41 +0.6
42,552 + Ac3H11_928 0.41 -1.9
42,552 + Ac3H11_928 0.41 +0.3
42,553 - Ac3H11_928 0.41 +0.7
42,553 - Ac3H11_928 0.41 -1.1
42,758 + Ac3H11_928 0.64 +1.5
42,758 + Ac3H11_928 0.64 +0.6
42,758 + Ac3H11_928 0.64 -0.4
42,758 + Ac3H11_928 0.64 +0.4
42,759 - Ac3H11_928 0.64 +0.6
42,759 - Ac3H11_928 0.64 +0.9
42,759 - Ac3H11_928 0.64 +2.4
42,759 - Ac3H11_928 0.64 -1.1
42,759 - Ac3H11_928 0.64 -1.0
42,803 + Ac3H11_928 0.69 +0.5
42,803 + Ac3H11_928 0.69 +0.8
42,803 + Ac3H11_928 0.69 -0.3
42,803 + Ac3H11_928 0.69 +0.1
42,803 + Ac3H11_928 0.69 +0.5
42,803 + Ac3H11_928 0.69 +0.8
42,803 + Ac3H11_928 0.69 +1.1
42,803 + Ac3H11_928 0.69 +1.6
42,803 + Ac3H11_928 0.69 +1.4
42,804 - Ac3H11_928 0.69 +0.3
42,804 - Ac3H11_928 0.69 -1.9
42,804 - Ac3H11_928 0.69 -0.2
42,804 - Ac3H11_928 0.69 +0.7
42,807 + Ac3H11_928 0.69 -3.5
42,807 + Ac3H11_928 0.69 +1.6
42,807 + Ac3H11_928 0.69 -0.0
42,807 + Ac3H11_928 0.69 +0.6
42,807 + Ac3H11_928 0.69 +0.4
42,807 + Ac3H11_928 0.69 -0.9
42,807 + Ac3H11_928 0.69 -0.6
42,807 + Ac3H11_928 0.69 -0.6
42,808 - Ac3H11_928 0.69 +0.4
42,808 - Ac3H11_928 0.69 +1.2
42,808 - Ac3H11_928 0.69 +0.9
42,808 - Ac3H11_928 0.69 -0.7
42,808 - Ac3H11_928 0.69 +1.0
42,808 - Ac3H11_928 0.69 +0.1
42,808 - Ac3H11_928 0.69 -0.1
42,808 - Ac3H11_928 0.69 -0.4
42,856 - Ac3H11_928 0.74 -1.8
42,856 - Ac3H11_928 0.74 -1.1
42,871 + Ac3H11_928 0.76 -0.2
42,872 - Ac3H11_928 0.76 +0.1
42,872 - Ac3H11_928 0.76 +1.3
42,872 - Ac3H11_928 0.76 +0.5
42,882 + Ac3H11_928 0.77 +0.3
42,882 + Ac3H11_928 0.77 +0.3
42,883 - Ac3H11_928 0.77 +0.0
42,915 + Ac3H11_928 0.81 -1.5
42,915 + Ac3H11_928 0.81 +1.1
42,916 - Ac3H11_928 0.81 +1.0
42,916 - Ac3H11_928 0.81 -0.5
43,034 + -1.6
43,034 + +0.1
43,034 + -0.2
43,034 + +0.5
43,034 + +1.1
43,066 + -1.4
43,067 - +1.7
43,067 - -0.2
43,067 - +0.8
43,067 - -2.7
43,067 - +0.8
43,067 - +0.2
43,067 - +0.2
43,233 + +1.2
43,233 + +0.1
43,233 + +0.1
43,233 + +0.3
43,233 + -1.3
43,233 + +1.3
43,234 - -1.1
43,234 - +1.3
43,234 - -0.7
43,234 - -1.3
43,572 + Ac3H11_929 0.28 -0.6
43,572 + Ac3H11_929 0.28 -1.4
43,572 + Ac3H11_929 0.28 +0.5
43,572 + Ac3H11_929 0.28 -0.1
43,572 + Ac3H11_929 0.28 +0.5
43,573 - Ac3H11_929 0.28 +0.9
43,573 - Ac3H11_929 0.28 +0.8
43,573 - Ac3H11_929 0.28 -1.0
43,573 - Ac3H11_929 0.28 +0.3
43,650 + Ac3H11_929 0.33 -0.9
43,650 + Ac3H11_929 0.33 +1.1
43,650 + Ac3H11_929 0.33 -1.3
43,650 + Ac3H11_929 0.33 +0.8
43,650 + Ac3H11_929 0.33 +0.9
43,650 + Ac3H11_929 0.33 +0.5
43,650 + Ac3H11_929 0.33 +1.1
43,651 - Ac3H11_929 0.33 -0.1
43,651 - Ac3H11_929 0.33 +4.7
43,651 - Ac3H11_929 0.33 +0.1
43,651 - Ac3H11_929 0.33 -0.9
43,653 + Ac3H11_929 0.33 -1.5
43,653 + Ac3H11_929 0.33 +0.7
43,654 - Ac3H11_929 0.34 -1.1
43,654 - Ac3H11_929 0.34 -1.3
43,654 - Ac3H11_929 0.34 +0.7
43,654 - Ac3H11_929 0.34 +0.6
43,654 - Ac3H11_929 0.34 -2.3
43,749 + Ac3H11_929 0.40 -3.1
43,750 - Ac3H11_929 0.40 -0.4
44,151 + Ac3H11_929 0.69 -3.0
44,151 + Ac3H11_929 0.69 -0.1
44,151 + Ac3H11_929 0.69 -1.9
44,151 + Ac3H11_929 0.69 +1.3
44,152 - Ac3H11_929 0.69 -1.0
44,152 - Ac3H11_929 0.69 +0.1
44,152 - Ac3H11_929 0.69 -1.2
44,154 + Ac3H11_929 0.69 -1.1
44,154 + Ac3H11_929 0.69 -0.4
44,154 + Ac3H11_929 0.69 -1.3
44,155 - Ac3H11_929 0.69 +0.2
44,441 + Ac3H11_929 0.90 +1.3
44,441 + Ac3H11_929 0.90 +0.3
44,442 - Ac3H11_929 0.90 -3.4
44,442 - Ac3H11_929 0.90 -0.5
44,442 - Ac3H11_929 0.90 -1.0
44,442 - Ac3H11_929 0.90 +0.7
44,647 - -0.6
44,675 + Ac3H11_930 0.11 -1.2
44,675 + Ac3H11_930 0.11 +1.0
44,675 + Ac3H11_930 0.11 +2.6
44,675 + Ac3H11_930 0.11 +0.3
44,675 + Ac3H11_930 0.11 -0.9
44,675 + Ac3H11_930 0.11 +2.0
44,675 + Ac3H11_930 0.11 +0.9
44,675 + Ac3H11_930 0.11 +0.7
44,676 - Ac3H11_930 0.11 -1.0
44,676 - Ac3H11_930 0.11 +1.8
44,676 - Ac3H11_930 0.11 -0.7
44,676 - Ac3H11_930 0.11 -0.5
44,774 + Ac3H11_930 0.24 -0.5
44,774 + Ac3H11_930 0.24 +0.6
44,774 + Ac3H11_930 0.24 -0.0
44,775 - Ac3H11_930 0.24 +0.7
44,775 - Ac3H11_930 0.24 +0.5
44,977 + Ac3H11_930 0.51 +0.6
45,071 + Ac3H11_930 0.63 +1.6
45,071 + Ac3H11_930 0.63 -0.3
45,132 - Ac3H11_930 0.72 +0.4
45,373 + +0.3
45,374 - +1.3
45,421 + +0.2
45,421 + -0.1
45,422 - +0.3
45,457 + -0.3
45,458 - -0.2
45,458 - +0.1
45,467 + +1.3
45,489 - -0.5

Or see this region's nucleotide sequence