Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_5000 and Ac3H11_5001 are separated by 412 nucleotides Ac3H11_5001 and Ac3H11_5002 are separated by 13 nucleotides
Ac3H11_5000 - 2-isopropylmalate synthase (EC 2.3.3.13), at 169,725 to 171,425
_5000
Ac3H11_5001 - PhnB protein, at 171,838 to 172,203
_5001
Ac3H11_5002 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 172,217 to 174,142
_5002
Position (kb) 171
172
173 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 170.905 kb on + strand, within Ac3H11_5000 at 170.905 kb on + strand, within Ac3H11_5000 at 170.906 kb on - strand, within Ac3H11_5000 at 170.906 kb on - strand, within Ac3H11_5000 at 170.906 kb on - strand, within Ac3H11_5000 at 170.936 kb on + strand, within Ac3H11_5000 at 170.957 kb on - strand, within Ac3H11_5000 at 171.043 kb on + strand, within Ac3H11_5000 at 171.043 kb on + strand, within Ac3H11_5000 at 171.043 kb on + strand, within Ac3H11_5000 at 171.043 kb on + strand, within Ac3H11_5000 at 171.044 kb on - strand, within Ac3H11_5000 at 171.044 kb on - strand, within Ac3H11_5000 at 171.044 kb on - strand, within Ac3H11_5000 at 171.044 kb on - strand, within Ac3H11_5000 at 171.400 kb on + strand at 171.400 kb on + strand at 171.400 kb on + strand at 171.400 kb on + strand at 171.400 kb on + strand at 171.400 kb on + strand at 171.401 kb on - strand at 171.401 kb on - strand at 171.622 kb on + strand at 171.622 kb on + strand at 171.622 kb on + strand at 171.622 kb on + strand at 171.622 kb on + strand at 171.623 kb on - strand at 171.623 kb on - strand at 171.634 kb on + strand at 171.664 kb on - strand at 171.677 kb on + strand at 171.678 kb on - strand at 171.844 kb on + strand at 171.844 kb on + strand at 171.845 kb on - strand at 171.845 kb on - strand at 171.845 kb on - strand at 171.845 kb on - strand at 171.913 kb on + strand, within Ac3H11_5001 at 171.913 kb on + strand, within Ac3H11_5001 at 171.913 kb on + strand, within Ac3H11_5001 at 171.913 kb on + strand, within Ac3H11_5001 at 171.914 kb on - strand, within Ac3H11_5001 at 171.914 kb on - strand, within Ac3H11_5001 at 171.914 kb on - strand, within Ac3H11_5001 at 171.914 kb on - strand, within Ac3H11_5001 at 171.914 kb on - strand, within Ac3H11_5001 at 172.081 kb on + strand, within Ac3H11_5001 at 172.081 kb on + strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.082 kb on - strand, within Ac3H11_5001 at 172.183 kb on + strand at 172.183 kb on + strand at 172.183 kb on + strand at 172.184 kb on - strand at 172.219 kb on - strand at 172.281 kb on + strand at 172.281 kb on + strand at 172.281 kb on + strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.296 kb on + strand at 172.317 kb on + strand at 172.317 kb on + strand at 172.317 kb on + strand at 172.318 kb on - strand at 172.318 kb on - strand at 172.485 kb on + strand, within Ac3H11_5002 at 172.486 kb on - strand, within Ac3H11_5002 at 172.500 kb on + strand, within Ac3H11_5002 at 172.776 kb on + strand, within Ac3H11_5002 at 172.777 kb on - strand, within Ac3H11_5002 at 172.777 kb on - strand, within Ac3H11_5002 at 172.920 kb on + strand, within Ac3H11_5002 at 172.920 kb on + strand, within Ac3H11_5002 at 172.920 kb on + strand, within Ac3H11_5002 at 172.921 kb on - strand, within Ac3H11_5002 at 173.058 kb on + strand, within Ac3H11_5002 at 173.058 kb on + strand, within Ac3H11_5002 at 173.058 kb on + strand, within Ac3H11_5002 at 173.058 kb on + strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002 at 173.059 kb on - strand, within Ac3H11_5002
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 170,905 + Ac3H11_5000 0.69 +0.1 170,905 + Ac3H11_5000 0.69 +0.2 170,906 - Ac3H11_5000 0.69 +1.0 170,906 - Ac3H11_5000 0.69 -0.9 170,906 - Ac3H11_5000 0.69 -2.6 170,936 + Ac3H11_5000 0.71 -1.0 170,957 - Ac3H11_5000 0.72 +1.1 171,043 + Ac3H11_5000 0.77 -0.0 171,043 + Ac3H11_5000 0.77 +1.2 171,043 + Ac3H11_5000 0.77 -0.2 171,043 + Ac3H11_5000 0.77 -1.1 171,044 - Ac3H11_5000 0.78 +0.5 171,044 - Ac3H11_5000 0.78 +0.3 171,044 - Ac3H11_5000 0.78 +0.2 171,044 - Ac3H11_5000 0.78 -1.2 171,400 + -0.5 171,400 + +0.9 171,400 + +2.0 171,400 + +0.3 171,400 + +0.0 171,400 + -0.2 171,401 - +0.8 171,401 - +0.3 171,622 + -0.5 171,622 + +1.0 171,622 + -1.0 171,622 + +0.5 171,622 + -1.7 171,623 - -0.8 171,623 - +0.9 171,634 + -1.1 171,664 - +0.4 171,677 + +1.1 171,678 - -1.3 171,844 + +0.3 171,844 + -1.5 171,845 - +0.6 171,845 - -1.5 171,845 - -0.4 171,845 - +1.5 171,913 + Ac3H11_5001 0.20 -1.6 171,913 + Ac3H11_5001 0.20 +0.2 171,913 + Ac3H11_5001 0.20 +0.7 171,913 + Ac3H11_5001 0.20 -1.5 171,914 - Ac3H11_5001 0.21 -1.1 171,914 - Ac3H11_5001 0.21 -1.1 171,914 - Ac3H11_5001 0.21 -1.4 171,914 - Ac3H11_5001 0.21 -0.2 171,914 - Ac3H11_5001 0.21 -0.4 172,081 + Ac3H11_5001 0.66 -0.1 172,081 + Ac3H11_5001 0.66 -1.3 172,082 - Ac3H11_5001 0.67 -0.2 172,082 - Ac3H11_5001 0.67 +0.1 172,082 - Ac3H11_5001 0.67 -0.8 172,082 - Ac3H11_5001 0.67 +0.4 172,082 - Ac3H11_5001 0.67 +0.9 172,082 - Ac3H11_5001 0.67 +0.5 172,082 - Ac3H11_5001 0.67 +2.8 172,183 + +1.2 172,183 + -0.1 172,183 + -0.7 172,184 - +0.6 172,219 - +1.2 172,281 + +1.2 172,281 + +0.8 172,281 + -1.6 172,282 - +0.9 172,282 - +0.9 172,282 - -1.0 172,296 + -0.4 172,317 + +0.1 172,317 + -3.8 172,317 + -0.4 172,318 - +0.3 172,318 - +0.4 172,485 + Ac3H11_5002 0.14 -0.2 172,486 - Ac3H11_5002 0.14 +1.3 172,500 + Ac3H11_5002 0.15 -0.3 172,776 + Ac3H11_5002 0.29 +0.1 172,777 - Ac3H11_5002 0.29 +0.2 172,777 - Ac3H11_5002 0.29 -0.5 172,920 + Ac3H11_5002 0.37 -0.1 172,920 + Ac3H11_5002 0.37 +0.6 172,920 + Ac3H11_5002 0.37 -1.9 172,921 - Ac3H11_5002 0.37 -1.3 173,058 + Ac3H11_5002 0.44 +0.6 173,058 + Ac3H11_5002 0.44 -1.3 173,058 + Ac3H11_5002 0.44 -1.1 173,058 + Ac3H11_5002 0.44 +1.1 173,059 - Ac3H11_5002 0.44 -1.3 173,059 - Ac3H11_5002 0.44 -0.2 173,059 - Ac3H11_5002 0.44 +0.1 173,059 - Ac3H11_5002 0.44 +1.3 173,059 - Ac3H11_5002 0.44 +0.2 173,059 - Ac3H11_5002 0.44 -1.3 173,059 - Ac3H11_5002 0.44 +0.9
Or see this region's nucleotide sequence