Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4776

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4775 and Ac3H11_4776 overlap by 15 nucleotidesAc3H11_4776 and Ac3H11_4777 are separated by 59 nucleotides Ac3H11_4775 - Putative membrane protein, at 75,918 to 77,246 _4775 Ac3H11_4776 - hypothetical protein, at 77,232 to 77,351 _4776 Ac3H11_4777 - ATP-dependent protease domain protein (EC 3.4.21.-), at 77,411 to 78,418 _4777 Position (kb) 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.294 kb on + strand, within Ac3H11_4775at 76.294 kb on + strand, within Ac3H11_4775at 76.294 kb on + strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.295 kb on - strand, within Ac3H11_4775at 76.347 kb on + strand, within Ac3H11_4775at 76.347 kb on + strand, within Ac3H11_4775at 76.348 kb on - strand, within Ac3H11_4775at 76.348 kb on - strand, within Ac3H11_4775at 76.348 kb on - strand, within Ac3H11_4775at 76.348 kb on - strand, within Ac3H11_4775at 76.348 kb on - strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.465 kb on + strand, within Ac3H11_4775at 76.466 kb on - strand, within Ac3H11_4775at 76.466 kb on - strand, within Ac3H11_4775at 76.466 kb on - strand, within Ac3H11_4775at 76.504 kb on + strand, within Ac3H11_4775at 76.505 kb on - strand, within Ac3H11_4775at 76.505 kb on - strand, within Ac3H11_4775at 76.505 kb on - strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.780 kb on + strand, within Ac3H11_4775at 76.781 kb on - strand, within Ac3H11_4775at 76.781 kb on - strand, within Ac3H11_4775at 76.781 kb on - strand, within Ac3H11_4775at 76.781 kb on - strand, within Ac3H11_4775at 76.781 kb on - strand, within Ac3H11_4775at 77.071 kb on + strand, within Ac3H11_4775at 77.071 kb on + strand, within Ac3H11_4775at 77.071 kb on + strand, within Ac3H11_4775at 77.071 kb on + strand, within Ac3H11_4775at 77.072 kb on - strand, within Ac3H11_4775at 77.072 kb on - strand, within Ac3H11_4775at 77.072 kb on - strand, within Ac3H11_4775at 77.072 kb on - strand, within Ac3H11_4775at 77.072 kb on - strand, within Ac3H11_4775at 77.296 kb on + strand, within Ac3H11_4776at 77.296 kb on + strand, within Ac3H11_4776at 77.296 kb on + strand, within Ac3H11_4776at 77.296 kb on + strand, within Ac3H11_4776at 77.296 kb on + strand, within Ac3H11_4776at 77.297 kb on - strandat 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.297 kb on - strand, within Ac3H11_4776at 77.349 kb on + strandat 77.350 kb on - strandat 77.350 kb on - strandat 77.412 kb on + strandat 77.412 kb on + strandat 77.412 kb on + strandat 77.412 kb on + strandat 77.413 kb on - strandat 77.413 kb on - strandat 77.413 kb on - strandat 77.413 kb on - strandat 77.413 kb on - strandat 77.413 kb on - strandat 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.628 kb on + strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.629 kb on - strand, within Ac3H11_4777at 77.811 kb on + strand, within Ac3H11_4777at 77.811 kb on + strand, within Ac3H11_4777at 77.812 kb on - strand, within Ac3H11_4777at 77.812 kb on - strand, within Ac3H11_4777at 77.812 kb on - strand, within Ac3H11_4777at 77.827 kb on - strand, within Ac3H11_4777at 77.827 kb on - strand, within Ac3H11_4777at 77.827 kb on - strand, within Ac3H11_4777at 77.827 kb on - strand, within Ac3H11_4777at 77.847 kb on + strand, within Ac3H11_4777at 77.847 kb on + strand, within Ac3H11_4777at 77.848 kb on - strand, within Ac3H11_4777at 77.848 kb on - strand, within Ac3H11_4777at 77.848 kb on - strand, within Ac3H11_4777at 77.848 kb on - strand, within Ac3H11_4777at 77.848 kb on - strand, within Ac3H11_4777at 77.904 kb on + strand, within Ac3H11_4777at 77.904 kb on + strand, within Ac3H11_4777at 77.905 kb on - strand, within Ac3H11_4777at 77.905 kb on - strand, within Ac3H11_4777at 77.905 kb on - strand, within Ac3H11_4777at 77.905 kb on - strand, within Ac3H11_4777at 77.905 kb on - strand, within Ac3H11_4777at 78.019 kb on + strand, within Ac3H11_4777at 78.020 kb on - strand, within Ac3H11_4777at 78.190 kb on - strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.264 kb on + strand, within Ac3H11_4777at 78.265 kb on - strand, within Ac3H11_4777at 78.285 kb on + strand, within Ac3H11_4777at 78.285 kb on + strand, within Ac3H11_4777at 78.286 kb on - strand, within Ac3H11_4777

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
76,294 + Ac3H11_4775 0.28 -0.5
76,294 + Ac3H11_4775 0.28 -3.0
76,294 + Ac3H11_4775 0.28 -0.2
76,295 - Ac3H11_4775 0.28 +1.5
76,295 - Ac3H11_4775 0.28 -2.4
76,295 - Ac3H11_4775 0.28 -2.7
76,295 - Ac3H11_4775 0.28 +0.4
76,295 - Ac3H11_4775 0.28 +0.1
76,295 - Ac3H11_4775 0.28 -2.4
76,347 + Ac3H11_4775 0.32 +0.1
76,347 + Ac3H11_4775 0.32 -0.2
76,348 - Ac3H11_4775 0.32 -0.2
76,348 - Ac3H11_4775 0.32 -1.8
76,348 - Ac3H11_4775 0.32 +1.6
76,348 - Ac3H11_4775 0.32 -0.4
76,348 - Ac3H11_4775 0.32 +1.5
76,465 + Ac3H11_4775 0.41 -0.0
76,465 + Ac3H11_4775 0.41 -3.3
76,465 + Ac3H11_4775 0.41 -0.1
76,465 + Ac3H11_4775 0.41 +1.3
76,465 + Ac3H11_4775 0.41 +0.6
76,465 + Ac3H11_4775 0.41 -1.4
76,466 - Ac3H11_4775 0.41 -0.3
76,466 - Ac3H11_4775 0.41 -1.5
76,466 - Ac3H11_4775 0.41 -1.3
76,504 + Ac3H11_4775 0.44 -1.2
76,505 - Ac3H11_4775 0.44 -1.7
76,505 - Ac3H11_4775 0.44 -2.4
76,505 - Ac3H11_4775 0.44 +1.9
76,780 + Ac3H11_4775 0.65 -0.8
76,780 + Ac3H11_4775 0.65 -0.3
76,780 + Ac3H11_4775 0.65 +0.7
76,780 + Ac3H11_4775 0.65 -0.9
76,780 + Ac3H11_4775 0.65 -0.4
76,780 + Ac3H11_4775 0.65 -0.2
76,781 - Ac3H11_4775 0.65 -1.5
76,781 - Ac3H11_4775 0.65 -1.8
76,781 - Ac3H11_4775 0.65 +0.1
76,781 - Ac3H11_4775 0.65 +1.3
76,781 - Ac3H11_4775 0.65 -1.4
77,071 + Ac3H11_4775 0.87 +0.8
77,071 + Ac3H11_4775 0.87 +0.6
77,071 + Ac3H11_4775 0.87 +1.0
77,071 + Ac3H11_4775 0.87 +0.2
77,072 - Ac3H11_4775 0.87 -1.0
77,072 - Ac3H11_4775 0.87 -0.5
77,072 - Ac3H11_4775 0.87 -1.1
77,072 - Ac3H11_4775 0.87 -2.3
77,072 - Ac3H11_4775 0.87 -2.6
77,296 + Ac3H11_4776 0.53 -1.1
77,296 + Ac3H11_4776 0.53 -2.4
77,296 + Ac3H11_4776 0.53 +0.2
77,296 + Ac3H11_4776 0.53 +1.0
77,296 + Ac3H11_4776 0.53 -2.5
77,297 - +1.3
77,297 - Ac3H11_4776 0.54 -1.7
77,297 - Ac3H11_4776 0.54 -2.7
77,297 - Ac3H11_4776 0.54 -0.3
77,297 - Ac3H11_4776 0.54 -3.5
77,297 - Ac3H11_4776 0.54 -0.7
77,297 - Ac3H11_4776 0.54 -0.0
77,297 - Ac3H11_4776 0.54 -3.1
77,297 - Ac3H11_4776 0.54 -3.7
77,349 + +0.3
77,350 - -2.0
77,350 - +0.8
77,412 + +1.3
77,412 + -1.4
77,412 + +0.8
77,412 + -0.2
77,413 - +0.5
77,413 - -2.5
77,413 - +0.9
77,413 - -0.2
77,413 - -1.5
77,413 - +0.0
77,628 + Ac3H11_4777 0.22 +1.2
77,628 + Ac3H11_4777 0.22 +0.5
77,628 + Ac3H11_4777 0.22 +0.4
77,628 + Ac3H11_4777 0.22 +0.2
77,628 + Ac3H11_4777 0.22 +0.1
77,628 + Ac3H11_4777 0.22 -0.0
77,628 + Ac3H11_4777 0.22 +0.3
77,629 - Ac3H11_4777 0.22 -0.1
77,629 - Ac3H11_4777 0.22 -1.7
77,629 - Ac3H11_4777 0.22 +1.1
77,629 - Ac3H11_4777 0.22 -0.9
77,629 - Ac3H11_4777 0.22 -2.7
77,629 - Ac3H11_4777 0.22 +0.6
77,629 - Ac3H11_4777 0.22 -1.0
77,629 - Ac3H11_4777 0.22 -0.3
77,629 - Ac3H11_4777 0.22 +0.2
77,629 - Ac3H11_4777 0.22 -0.7
77,811 + Ac3H11_4777 0.40 +0.5
77,811 + Ac3H11_4777 0.40 +0.9
77,812 - Ac3H11_4777 0.40 +1.1
77,812 - Ac3H11_4777 0.40 -2.5
77,812 - Ac3H11_4777 0.40 +0.5
77,827 - Ac3H11_4777 0.41 -1.1
77,827 - Ac3H11_4777 0.41 +0.9
77,827 - Ac3H11_4777 0.41 +1.2
77,827 - Ac3H11_4777 0.41 -2.0
77,847 + Ac3H11_4777 0.43 +0.2
77,847 + Ac3H11_4777 0.43 +0.9
77,848 - Ac3H11_4777 0.43 -0.1
77,848 - Ac3H11_4777 0.43 -0.0
77,848 - Ac3H11_4777 0.43 +0.6
77,848 - Ac3H11_4777 0.43 +0.5
77,848 - Ac3H11_4777 0.43 -1.6
77,904 + Ac3H11_4777 0.49 -0.2
77,904 + Ac3H11_4777 0.49 +1.3
77,905 - Ac3H11_4777 0.49 +0.0
77,905 - Ac3H11_4777 0.49 -0.6
77,905 - Ac3H11_4777 0.49 +0.0
77,905 - Ac3H11_4777 0.49 -1.2
77,905 - Ac3H11_4777 0.49 -2.3
78,019 + Ac3H11_4777 0.60 +1.7
78,020 - Ac3H11_4777 0.60 +0.2
78,190 - Ac3H11_4777 0.77 +0.0
78,264 + Ac3H11_4777 0.85 +0.9
78,264 + Ac3H11_4777 0.85 +1.1
78,264 + Ac3H11_4777 0.85 -0.1
78,264 + Ac3H11_4777 0.85 +0.8
78,264 + Ac3H11_4777 0.85 +2.0
78,264 + Ac3H11_4777 0.85 +0.4
78,264 + Ac3H11_4777 0.85 +1.3
78,265 - Ac3H11_4777 0.85 -0.1
78,285 + Ac3H11_4777 0.87 +0.6
78,285 + Ac3H11_4777 0.87 -1.1
78,286 - Ac3H11_4777 0.87 -1.0

Or see this region's nucleotide sequence