Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4570 and Ac3H11_4571 overlap by 4 nucleotides Ac3H11_4570 - Heavy metal RND efflux outer membrane protein, CzcC family, at 166,269 to 167,336 _4570 Ac3H11_4571 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 167,333 to 167,965 _4571 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 165.281 kb on + strandat 165.281 kb on + strandat 165.352 kb on - strandat 165.352 kb on - strandat 165.352 kb on - strandat 165.352 kb on - strandat 165.390 kb on + strandat 165.390 kb on + strandat 165.390 kb on + strandat 165.396 kb on + strandat 165.396 kb on + strandat 165.396 kb on + strandat 165.396 kb on + strandat 165.402 kb on + strandat 165.402 kb on + strandat 165.456 kb on + strandat 165.456 kb on + strandat 165.525 kb on + strandat 165.538 kb on + strandat 165.539 kb on - strandat 165.539 kb on - strandat 165.539 kb on - strandat 165.545 kb on - strandat 165.559 kb on + strandat 165.559 kb on + strandat 165.562 kb on + strandat 165.562 kb on + strandat 165.562 kb on + strandat 165.562 kb on + strandat 165.562 kb on + strandat 165.562 kb on + strandat 165.976 kb on + strandat 165.976 kb on + strandat 165.979 kb on + strandat 165.979 kb on + strandat 166.136 kb on + strandat 166.257 kb on - strandat 166.435 kb on + strand, within Ac3H11_4570at 166.583 kb on - strand, within Ac3H11_4570at 166.583 kb on - strand, within Ac3H11_4570at 166.726 kb on + strand, within Ac3H11_4570at 166.726 kb on + strand, within Ac3H11_4570at 167.042 kb on - strand, within Ac3H11_4570at 167.042 kb on - strand, within Ac3H11_4570at 167.246 kb on + strandat 167.247 kb on - strandat 167.349 kb on + strandat 167.349 kb on + strandat 167.349 kb on + strandat 167.349 kb on + strandat 167.349 kb on + strandat 167.350 kb on - strandat 167.350 kb on - strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.373 kb on + strandat 167.374 kb on - strandat 167.374 kb on - strandat 167.374 kb on - strandat 167.413 kb on + strand, within Ac3H11_4571at 167.423 kb on + strand, within Ac3H11_4571at 167.423 kb on + strand, within Ac3H11_4571at 167.423 kb on + strand, within Ac3H11_4571at 167.423 kb on + strand, within Ac3H11_4571at 167.424 kb on - strand, within Ac3H11_4571at 167.424 kb on - strand, within Ac3H11_4571at 167.424 kb on - strand, within Ac3H11_4571at 167.424 kb on - strand, within Ac3H11_4571at 167.748 kb on + strand, within Ac3H11_4571at 168.101 kb on + strandat 168.101 kb on + strandat 168.101 kb on + strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.102 kb on - strandat 168.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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165,281 + -1.8
165,281 + -2.9
165,352 - +1.0
165,352 - +0.2
165,352 - +1.0
165,352 - +0.4
165,390 + -0.2
165,390 + -2.0
165,390 + -0.2
165,396 + +0.9
165,396 + +2.8
165,396 + -0.2
165,396 + -0.2
165,402 + -1.3
165,402 + -0.7
165,456 + -1.1
165,456 + +0.3
165,525 + +0.0
165,538 + -0.0
165,539 - -0.7
165,539 - -2.5
165,539 - -2.0
165,545 - -2.5
165,559 + -1.1
165,559 + +0.0
165,562 + +0.1
165,562 + -1.0
165,562 + +1.0
165,562 + +0.4
165,562 + +2.0
165,562 + -0.1
165,976 + +1.5
165,976 + -0.3
165,979 + +0.9
165,979 + -2.5
166,136 + -0.6
166,257 - +0.0
166,435 + Ac3H11_4570 0.16 +0.8
166,583 - Ac3H11_4570 0.29 +1.3
166,583 - Ac3H11_4570 0.29 +1.4
166,726 + Ac3H11_4570 0.43 +1.0
166,726 + Ac3H11_4570 0.43 +1.2
167,042 - Ac3H11_4570 0.72 +1.2
167,042 - Ac3H11_4570 0.72 +0.9
167,246 + -1.4
167,247 - +1.8
167,349 + -0.4
167,349 + +0.0
167,349 + -2.5
167,349 + +0.7
167,349 + +0.8
167,350 - -1.7
167,350 - +0.4
167,373 + +0.8
167,373 + -1.9
167,373 + -1.1
167,373 + +0.2
167,373 + +0.4
167,373 + +0.7
167,373 + -0.8
167,374 - +2.2
167,374 - +1.0
167,374 - +0.5
167,413 + Ac3H11_4571 0.13 -0.8
167,423 + Ac3H11_4571 0.14 -2.2
167,423 + Ac3H11_4571 0.14 -1.7
167,423 + Ac3H11_4571 0.14 -0.1
167,423 + Ac3H11_4571 0.14 +0.4
167,424 - Ac3H11_4571 0.14 -0.9
167,424 - Ac3H11_4571 0.14 -2.6
167,424 - Ac3H11_4571 0.14 +0.0
167,424 - Ac3H11_4571 0.14 -1.8
167,748 + Ac3H11_4571 0.66 +0.1
168,101 + -2.1
168,101 + +0.4
168,101 + +0.0
168,102 - +1.1
168,102 - -0.5
168,102 - -0.8
168,102 - +1.4
168,102 - +0.2
168,102 - +0.6
168,102 - -0.4
168,102 - +0.0
168,102 - +0.8
168,102 - +0.3
168,102 - -1.1
168,102 - -0.2
168,193 - -1.9

Or see this region's nucleotide sequence