Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4283

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4282 and Ac3H11_4283 are separated by 142 nucleotidesAc3H11_4283 and Ac3H11_4284 overlap by 44 nucleotidesAc3H11_4284 and Ac3H11_4285 are separated by 75 nucleotides Ac3H11_4282 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 58,240 to 59,118 _4282 Ac3H11_4283 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 59,261 to 61,324 _4283 Ac3H11_4284 - hypothetical protein, at 61,281 to 61,403 _4284 Ac3H11_4285 - diguanylate cyclase, at 61,479 to 62,735 _4285 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.297 kb on + strandat 58.297 kb on + strandat 58.298 kb on - strandat 58.567 kb on + strand, within Ac3H11_4282at 58.568 kb on - strand, within Ac3H11_4282at 58.747 kb on + strand, within Ac3H11_4282at 58.748 kb on - strand, within Ac3H11_4282at 58.748 kb on - strand, within Ac3H11_4282at 58.748 kb on - strand, within Ac3H11_4282at 58.828 kb on + strand, within Ac3H11_4282at 58.828 kb on + strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.829 kb on - strand, within Ac3H11_4282at 58.876 kb on + strand, within Ac3H11_4282at 58.877 kb on - strand, within Ac3H11_4282at 58.993 kb on + strand, within Ac3H11_4282at 58.994 kb on - strand, within Ac3H11_4282at 58.994 kb on - strand, within Ac3H11_4282at 59.034 kb on + strandat 59.035 kb on - strandat 59.035 kb on - strandat 59.035 kb on - strandat 59.116 kb on + strandat 59.116 kb on + strandat 59.156 kb on + strandat 59.157 kb on - strandat 59.172 kb on + strandat 59.173 kb on - strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.196 kb on - strandat 59.236 kb on + strandat 59.236 kb on + strandat 59.236 kb on + strandat 59.236 kb on + strandat 59.236 kb on + strandat 59.237 kb on - strandat 59.237 kb on - strandat 59.237 kb on - strandat 59.237 kb on - strandat 59.504 kb on + strand, within Ac3H11_4283at 59.505 kb on - strand, within Ac3H11_4283at 59.555 kb on + strand, within Ac3H11_4283at 59.579 kb on + strand, within Ac3H11_4283at 59.579 kb on + strand, within Ac3H11_4283at 59.580 kb on - strand, within Ac3H11_4283at 59.580 kb on - strand, within Ac3H11_4283at 59.580 kb on - strand, within Ac3H11_4283at 59.580 kb on - strand, within Ac3H11_4283at 59.594 kb on - strand, within Ac3H11_4283at 59.732 kb on + strand, within Ac3H11_4283at 59.732 kb on + strand, within Ac3H11_4283at 59.733 kb on - strand, within Ac3H11_4283at 59.759 kb on + strand, within Ac3H11_4283at 59.759 kb on + strand, within Ac3H11_4283at 59.760 kb on - strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.792 kb on + strand, within Ac3H11_4283at 59.793 kb on - strand, within Ac3H11_4283at 59.793 kb on - strand, within Ac3H11_4283at 59.793 kb on - strand, within Ac3H11_4283at 59.793 kb on - strand, within Ac3H11_4283at 59.793 kb on - strand, within Ac3H11_4283at 59.804 kb on + strand, within Ac3H11_4283at 59.805 kb on - strand, within Ac3H11_4283at 59.805 kb on - strand, within Ac3H11_4283at 59.933 kb on + strand, within Ac3H11_4283at 59.933 kb on + strand, within Ac3H11_4283at 59.934 kb on - strand, within Ac3H11_4283at 59.934 kb on - strand, within Ac3H11_4283at 59.934 kb on - strand, within Ac3H11_4283at 59.934 kb on - strand, within Ac3H11_4283at 59.934 kb on - strand, within Ac3H11_4283at 59.978 kb on + strand, within Ac3H11_4283at 59.978 kb on + strand, within Ac3H11_4283at 59.978 kb on + strand, within Ac3H11_4283at 59.979 kb on - strand, within Ac3H11_4283at 59.979 kb on - strand, within Ac3H11_4283at 59.979 kb on - strand, within Ac3H11_4283at 60.017 kb on + strand, within Ac3H11_4283at 60.416 kb on + strand, within Ac3H11_4283at 60.416 kb on + strand, within Ac3H11_4283at 60.416 kb on + strand, within Ac3H11_4283at 60.417 kb on - strand, within Ac3H11_4283at 61.282 kb on + strandat 61.283 kb on - strandat 61.433 kb on + strandat 61.433 kb on + strandat 61.433 kb on + strandat 61.433 kb on + strandat 61.433 kb on + strandat 61.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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58,297 + +0.4
58,297 + +0.7
58,298 - -0.3
58,567 + Ac3H11_4282 0.37 -0.3
58,568 - Ac3H11_4282 0.37 -0.1
58,747 + Ac3H11_4282 0.58 -0.2
58,748 - Ac3H11_4282 0.58 +0.0
58,748 - Ac3H11_4282 0.58 +0.4
58,748 - Ac3H11_4282 0.58 -0.2
58,828 + Ac3H11_4282 0.67 -0.5
58,828 + Ac3H11_4282 0.67 +0.8
58,829 - Ac3H11_4282 0.67 -0.2
58,829 - Ac3H11_4282 0.67 +0.3
58,829 - Ac3H11_4282 0.67 +0.6
58,829 - Ac3H11_4282 0.67 +0.2
58,829 - Ac3H11_4282 0.67 +0.1
58,829 - Ac3H11_4282 0.67 +0.8
58,829 - Ac3H11_4282 0.67 -0.4
58,829 - Ac3H11_4282 0.67 +1.1
58,829 - Ac3H11_4282 0.67 +0.2
58,876 + Ac3H11_4282 0.72 +0.4
58,877 - Ac3H11_4282 0.72 +0.1
58,993 + Ac3H11_4282 0.86 -0.9
58,994 - Ac3H11_4282 0.86 -1.0
58,994 - Ac3H11_4282 0.86 -0.4
59,034 + +0.6
59,035 - +2.2
59,035 - +0.7
59,035 - -1.3
59,116 + -0.8
59,116 + +1.7
59,156 + -1.5
59,157 - -2.5
59,172 + -0.7
59,173 - -0.1
59,196 - +1.0
59,196 - +0.2
59,196 - +1.2
59,236 + +0.5
59,236 + -1.3
59,236 + +1.1
59,236 + +0.5
59,236 + -1.9
59,237 - -0.8
59,237 - -0.4
59,237 - +1.1
59,237 - +0.3
59,504 + Ac3H11_4283 0.12 -0.0
59,505 - Ac3H11_4283 0.12 -0.5
59,555 + Ac3H11_4283 0.14 +0.4
59,579 + Ac3H11_4283 0.15 +1.0
59,579 + Ac3H11_4283 0.15 +2.6
59,580 - Ac3H11_4283 0.15 +1.4
59,580 - Ac3H11_4283 0.15 +0.2
59,580 - Ac3H11_4283 0.15 -0.5
59,580 - Ac3H11_4283 0.15 +0.3
59,594 - Ac3H11_4283 0.16 +0.3
59,732 + Ac3H11_4283 0.23 -0.4
59,732 + Ac3H11_4283 0.23 -2.8
59,733 - Ac3H11_4283 0.23 +0.8
59,759 + Ac3H11_4283 0.24 -2.7
59,759 + Ac3H11_4283 0.24 -0.8
59,760 - Ac3H11_4283 0.24 +0.7
59,792 + Ac3H11_4283 0.26 -0.1
59,792 + Ac3H11_4283 0.26 -0.3
59,792 + Ac3H11_4283 0.26 +0.8
59,792 + Ac3H11_4283 0.26 -0.4
59,792 + Ac3H11_4283 0.26 -1.1
59,792 + Ac3H11_4283 0.26 +1.3
59,793 - Ac3H11_4283 0.26 +0.1
59,793 - Ac3H11_4283 0.26 -0.6
59,793 - Ac3H11_4283 0.26 -1.9
59,793 - Ac3H11_4283 0.26 -0.6
59,793 - Ac3H11_4283 0.26 +0.9
59,804 + Ac3H11_4283 0.26 -0.0
59,805 - Ac3H11_4283 0.26 +0.8
59,805 - Ac3H11_4283 0.26 +2.0
59,933 + Ac3H11_4283 0.33 -1.4
59,933 + Ac3H11_4283 0.33 +1.0
59,934 - Ac3H11_4283 0.33 +0.1
59,934 - Ac3H11_4283 0.33 -1.3
59,934 - Ac3H11_4283 0.33 +0.6
59,934 - Ac3H11_4283 0.33 -0.4
59,934 - Ac3H11_4283 0.33 -1.5
59,978 + Ac3H11_4283 0.35 -0.5
59,978 + Ac3H11_4283 0.35 -1.3
59,978 + Ac3H11_4283 0.35 +0.3
59,979 - Ac3H11_4283 0.35 -0.2
59,979 - Ac3H11_4283 0.35 +0.9
59,979 - Ac3H11_4283 0.35 -0.1
60,017 + Ac3H11_4283 0.37 +0.2
60,416 + Ac3H11_4283 0.56 +1.3
60,416 + Ac3H11_4283 0.56 +1.4
60,416 + Ac3H11_4283 0.56 -0.1
60,417 - Ac3H11_4283 0.56 -0.4
61,282 + +0.7
61,283 - +0.2
61,433 + -3.0
61,433 + -0.5
61,433 + +1.2
61,433 + -1.3
61,433 + -1.8
61,433 + +0.7

Or see this region's nucleotide sequence