Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3957 and Ac3H11_3958 are separated by 64 nucleotides Ac3H11_3958 and Ac3H11_3959 are separated by 44 nucleotides Ac3H11_3959 and Ac3H11_3960 are separated by 149 nucleotides
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592
_3958
Ac3H11_3959 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 183,637 to 184,365
_3959
Ac3H11_3960 - hypothetical protein, at 184,515 to 184,664
_3960
Ac3H11_3961 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 184,560 to 186,098
_3961
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 182.159 kb on + strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.880 kb on + strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.960 kb on - strand, within Ac3H11_3958 at 183.042 kb on + strand, within Ac3H11_3958 at 183.084 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.216 kb on + strand, within Ac3H11_3958 at 183.217 kb on - strand, within Ac3H11_3958 at 183.414 kb on + strand, within Ac3H11_3958 at 183.415 kb on - strand, within Ac3H11_3958 at 183.539 kb on + strand at 183.539 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.596 kb on - strand at 183.954 kb on + strand, within Ac3H11_3959 at 183.954 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.223 kb on - strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.461 kb on - strand at 184.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 181,718 + -1.9 181,718 + -0.5 181,719 - -0.2 181,778 + Ac3H11_3957 0.14 -0.7 181,778 + Ac3H11_3957 0.14 -0.3 181,778 + Ac3H11_3957 0.14 -1.5 181,934 + Ac3H11_3957 0.30 -2.8 181,934 + Ac3H11_3957 0.30 +0.4 182,159 + Ac3H11_3957 0.53 -0.0 182,160 - Ac3H11_3957 0.53 -1.6 182,160 - Ac3H11_3957 0.53 -1.4 182,271 + Ac3H11_3957 0.64 +0.8 182,271 + Ac3H11_3957 0.64 -1.7 182,271 + Ac3H11_3957 0.64 -0.4 182,271 + Ac3H11_3957 0.64 +1.6 182,271 + Ac3H11_3957 0.64 -1.9 182,271 + Ac3H11_3957 0.64 -0.7 182,272 - Ac3H11_3957 0.64 +0.8 182,272 - Ac3H11_3957 0.64 -0.0 182,272 - Ac3H11_3957 0.64 +0.2 182,272 - Ac3H11_3957 0.64 +0.5 182,734 - +0.4 182,734 - -1.2 182,734 - -0.5 182,734 - -1.5 182,880 + Ac3H11_3958 0.21 -0.7 182,881 - Ac3H11_3958 0.21 +0.6 182,881 - Ac3H11_3958 0.21 +1.1 182,881 - Ac3H11_3958 0.21 -0.5 182,881 - Ac3H11_3958 0.21 -1.7 182,881 - Ac3H11_3958 0.21 +0.0 182,946 + Ac3H11_3958 0.28 +0.5 182,946 + Ac3H11_3958 0.28 -1.2 182,946 + Ac3H11_3958 0.28 -1.2 182,947 - Ac3H11_3958 0.28 +0.6 182,947 - Ac3H11_3958 0.28 -0.9 182,947 - Ac3H11_3958 0.28 -1.2 182,960 - Ac3H11_3958 0.30 -0.2 183,042 + Ac3H11_3958 0.39 -1.6 183,084 + Ac3H11_3958 0.43 +0.5 183,207 + Ac3H11_3958 0.57 +0.5 183,207 + Ac3H11_3958 0.57 -0.5 183,207 + Ac3H11_3958 0.57 -0.3 183,207 + Ac3H11_3958 0.57 -1.0 183,216 + Ac3H11_3958 0.58 -0.9 183,217 - Ac3H11_3958 0.58 -0.7 183,414 + Ac3H11_3958 0.80 -0.1 183,415 - Ac3H11_3958 0.80 +1.7 183,539 + -0.0 183,539 + +1.3 183,595 + +1.4 183,595 + +0.9 183,595 + +0.8 183,596 - +1.3 183,954 + Ac3H11_3959 0.43 -2.2 183,954 + Ac3H11_3959 0.43 -1.3 184,222 + Ac3H11_3959 0.80 -1.0 184,222 + Ac3H11_3959 0.80 -2.3 184,223 - Ac3H11_3959 0.80 +0.1 184,258 + Ac3H11_3959 0.85 -1.6 184,258 + Ac3H11_3959 0.85 +1.7 184,258 + Ac3H11_3959 0.85 -3.3 184,258 + Ac3H11_3959 0.85 +0.0 184,259 - Ac3H11_3959 0.85 -3.0 184,259 - Ac3H11_3959 0.85 -2.3 184,460 + -2.1 184,460 + +0.1 184,460 + -1.3 184,460 + +0.1 184,460 + +0.6 184,461 - +1.0 184,465 - +0.2
Or see this region's nucleotide sequence