Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3953 and Ac3H11_3954 are separated by 34 nucleotides Ac3H11_3954 and Ac3H11_3955 are separated by 6 nucleotides
Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673
_3953
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.153 kb on + strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.192 kb on + strand, within Ac3H11_3953 at 178.331 kb on - strand, within Ac3H11_3953 at 178.518 kb on + strand at 178.519 kb on - strand at 178.899 kb on + strand, within Ac3H11_3954 at 178.900 kb on - strand, within Ac3H11_3954 at 178.985 kb on + strand, within Ac3H11_3954 at 178.986 kb on - strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.579 kb on + strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.684 kb on - strand at 179.684 kb on - strand at 179.720 kb on - strand at 179.720 kb on - strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.158 kb on + strand, within Ac3H11_3955 at 180.159 kb on - strand, within Ac3H11_3955 at 180.251 kb on + strand, within Ac3H11_3955 at 180.261 kb on - strand, within Ac3H11_3955 at 180.558 kb on - strand, within Ac3H11_3955
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 178,153 + Ac3H11_3953 0.67 +0.3 178,154 - Ac3H11_3953 0.67 -3.4 178,154 - Ac3H11_3953 0.67 +0.8 178,154 - Ac3H11_3953 0.67 -1.2 178,154 - Ac3H11_3953 0.67 -0.3 178,154 - Ac3H11_3953 0.67 -0.1 178,192 + Ac3H11_3953 0.69 -1.9 178,331 - Ac3H11_3953 0.78 +0.9 178,518 + -0.7 178,519 - +1.1 178,899 + Ac3H11_3954 0.19 +2.2 178,900 - Ac3H11_3954 0.19 +1.0 178,985 + Ac3H11_3954 0.27 -0.5 178,986 - Ac3H11_3954 0.27 +1.2 179,351 + Ac3H11_3954 0.62 +0.1 179,351 + Ac3H11_3954 0.62 +0.1 179,352 - Ac3H11_3954 0.62 -3.0 179,352 - Ac3H11_3954 0.62 +1.0 179,352 - Ac3H11_3954 0.62 +0.8 179,352 - Ac3H11_3954 0.62 -0.4 179,579 + Ac3H11_3954 0.84 +0.2 179,580 - Ac3H11_3954 0.84 -0.7 179,580 - Ac3H11_3954 0.84 +0.5 179,683 + -1.4 179,683 + -0.2 179,683 + -0.4 179,683 + +0.9 179,684 - -0.6 179,684 - +1.4 179,720 - +0.4 179,720 - +1.6 179,792 + -0.1 179,792 + +0.4 179,792 + +1.3 179,793 - -0.8 179,793 - +1.1 179,793 - -0.7 179,793 - -2.6 180,089 + Ac3H11_3955 0.27 +0.1 180,089 + Ac3H11_3955 0.27 +0.5 180,089 + Ac3H11_3955 0.27 -0.3 180,089 + Ac3H11_3955 0.27 +0.6 180,089 + Ac3H11_3955 0.27 +1.2 180,158 + Ac3H11_3955 0.32 +0.8 180,159 - Ac3H11_3955 0.32 +1.3 180,251 + Ac3H11_3955 0.39 -1.5 180,261 - Ac3H11_3955 0.40 -0.5 180,558 - Ac3H11_3955 0.63 +0.7
Or see this region's nucleotide sequence