Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3284 and Ac3H11_3285 are separated by 112 nucleotides Ac3H11_3285 and Ac3H11_3286 are separated by 132 nucleotides Ac3H11_3286 and Ac3H11_3287 are separated by 54 nucleotides
Ac3H11_3284 - Sugar transporter, at 16,980 to 18,344
_3284
Ac3H11_3285 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 18,457 to 19,545
_3285
Ac3H11_3286 - EAL domain protein, at 19,678 to 19,962
_3286
Ac3H11_3287 - EAL domain protein, at 20,017 to 20,502
_3287
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.526 kb on + strand, within Ac3H11_3284 at 17.527 kb on - strand, within Ac3H11_3284 at 17.527 kb on - strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.899 kb on - strand, within Ac3H11_3284 at 17.943 kb on + strand, within Ac3H11_3284 at 17.943 kb on + strand, within Ac3H11_3284 at 17.944 kb on - strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.099 kb on + strand, within Ac3H11_3284 at 18.100 kb on - strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.288 kb on + strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.664 kb on + strand, within Ac3H11_3285 at 18.664 kb on + strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.736 kb on + strand, within Ac3H11_3285 at 18.737 kb on - strand, within Ac3H11_3285 at 18.737 kb on - strand, within Ac3H11_3285 at 18.835 kb on + strand, within Ac3H11_3285 at 18.835 kb on + strand, within Ac3H11_3285 at 18.836 kb on - strand, within Ac3H11_3285 at 18.836 kb on - strand, within Ac3H11_3285 at 19.501 kb on + strand at 19.501 kb on + strand at 19.502 kb on - strand at 19.544 kb on - strand at 19.591 kb on - strand at 19.600 kb on - strand at 19.600 kb on - strand at 19.600 kb on - strand at 19.620 kb on + strand at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.752 kb on - strand, within Ac3H11_3286 at 19.752 kb on - strand, within Ac3H11_3286 at 20.018 kb on + strand at 20.019 kb on - strand at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.372 kb on + strand, within Ac3H11_3287 at 20.372 kb on + strand, within Ac3H11_3287 at 20.373 kb on - strand, within Ac3H11_3287 at 20.373 kb on - strand, within Ac3H11_3287
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 17,526 + Ac3H11_3284 0.40 -0.1 17,527 - Ac3H11_3284 0.40 +0.6 17,527 - Ac3H11_3284 0.40 +0.1 17,766 + Ac3H11_3284 0.58 -1.4 17,766 + Ac3H11_3284 0.58 -0.3 17,766 + Ac3H11_3284 0.58 +0.4 17,766 + Ac3H11_3284 0.58 +1.2 17,766 + Ac3H11_3284 0.58 +0.3 17,767 - Ac3H11_3284 0.58 -2.4 17,767 - Ac3H11_3284 0.58 +1.4 17,767 - Ac3H11_3284 0.58 -0.2 17,767 - Ac3H11_3284 0.58 -0.3 17,778 + Ac3H11_3284 0.58 -0.7 17,778 + Ac3H11_3284 0.58 -0.2 17,778 + Ac3H11_3284 0.58 -0.4 17,779 - Ac3H11_3284 0.59 +0.3 17,779 - Ac3H11_3284 0.59 +0.4 17,779 - Ac3H11_3284 0.59 -0.7 17,857 + Ac3H11_3284 0.64 +0.0 17,857 + Ac3H11_3284 0.64 -1.4 17,857 + Ac3H11_3284 0.64 -3.4 17,858 - Ac3H11_3284 0.64 -0.5 17,858 - Ac3H11_3284 0.64 +0.1 17,858 - +1.4 17,858 - Ac3H11_3284 0.64 -0.3 17,858 - Ac3H11_3284 0.64 -0.4 17,858 - Ac3H11_3284 0.64 +0.5 17,858 - Ac3H11_3284 0.64 -3.4 17,858 - Ac3H11_3284 0.64 +0.2 17,858 - Ac3H11_3284 0.64 -0.2 17,858 - Ac3H11_3284 0.64 +0.1 17,898 + Ac3H11_3284 0.67 -1.5 17,898 + Ac3H11_3284 0.67 +1.5 17,898 + Ac3H11_3284 0.67 +0.4 17,899 - Ac3H11_3284 0.67 -0.9 17,943 + Ac3H11_3284 0.71 +0.3 17,943 + Ac3H11_3284 0.71 +0.2 17,944 - Ac3H11_3284 0.71 -1.5 18,096 + Ac3H11_3284 0.82 +2.0 18,096 + Ac3H11_3284 0.82 +1.0 18,096 + Ac3H11_3284 0.82 +2.1 18,096 + Ac3H11_3284 0.82 +0.7 18,096 + Ac3H11_3284 0.82 +0.4 18,096 + Ac3H11_3284 0.82 -1.9 18,096 + Ac3H11_3284 0.82 +0.1 18,096 + Ac3H11_3284 0.82 +0.5 18,096 + Ac3H11_3284 0.82 +0.2 18,097 - Ac3H11_3284 0.82 -3.7 18,097 - Ac3H11_3284 0.82 -0.3 18,097 - Ac3H11_3284 0.82 +1.7 18,097 - Ac3H11_3284 0.82 -0.8 18,097 - Ac3H11_3284 0.82 -0.7 18,097 - Ac3H11_3284 0.82 +1.0 18,097 - Ac3H11_3284 0.82 +1.2 18,097 - Ac3H11_3284 0.82 -0.2 18,097 - Ac3H11_3284 0.82 +0.3 18,097 - Ac3H11_3284 0.82 +0.4 18,097 - Ac3H11_3284 0.82 +0.4 18,099 + Ac3H11_3284 0.82 +0.1 18,100 - Ac3H11_3284 0.82 -0.1 18,180 + Ac3H11_3284 0.88 +1.2 18,180 + Ac3H11_3284 0.88 -0.0 18,180 + Ac3H11_3284 0.88 -0.4 18,180 + Ac3H11_3284 0.88 +0.2 18,181 - Ac3H11_3284 0.88 -0.0 18,181 - Ac3H11_3284 0.88 +0.9 18,181 - Ac3H11_3284 0.88 -2.6 18,288 + +0.7 18,410 - -2.6 18,410 - +0.7 18,410 - +1.3 18,410 - +1.6 18,664 + Ac3H11_3285 0.19 -0.2 18,664 + Ac3H11_3285 0.19 +0.8 18,665 - Ac3H11_3285 0.19 -0.5 18,665 - Ac3H11_3285 0.19 -0.9 18,665 - Ac3H11_3285 0.19 +1.2 18,736 + Ac3H11_3285 0.26 -0.4 18,737 - Ac3H11_3285 0.26 +0.3 18,737 - Ac3H11_3285 0.26 +0.8 18,835 + Ac3H11_3285 0.35 -0.3 18,835 + Ac3H11_3285 0.35 -2.8 18,836 - Ac3H11_3285 0.35 -0.7 18,836 - Ac3H11_3285 0.35 -1.6 19,501 + +0.3 19,501 + +0.8 19,502 - -3.3 19,544 - +1.9 19,591 - -0.4 19,600 - +0.4 19,600 - -0.6 19,600 - -2.4 19,620 + -0.4 19,751 + Ac3H11_3286 0.26 -0.4 19,751 + Ac3H11_3286 0.26 -0.7 19,751 + Ac3H11_3286 0.26 -2.1 19,751 + Ac3H11_3286 0.26 -0.2 19,751 + Ac3H11_3286 0.26 +1.0 19,751 + Ac3H11_3286 0.26 -1.8 19,752 - Ac3H11_3286 0.26 -0.3 19,752 - Ac3H11_3286 0.26 +1.0 20,018 + +1.6 20,019 - -1.2 20,156 + Ac3H11_3287 0.29 -0.9 20,156 + Ac3H11_3287 0.29 +0.2 20,156 + Ac3H11_3287 0.29 +0.8 20,156 + Ac3H11_3287 0.29 -1.4 20,157 - Ac3H11_3287 0.29 +0.1 20,157 - Ac3H11_3287 0.29 +0.2 20,157 - Ac3H11_3287 0.29 +0.5 20,157 - Ac3H11_3287 0.29 -2.5 20,157 - Ac3H11_3287 0.29 -0.8 20,353 + Ac3H11_3287 0.69 +0.4 20,353 + Ac3H11_3287 0.69 +0.8 20,353 + Ac3H11_3287 0.69 +0.5 20,353 + Ac3H11_3287 0.69 +0.6 20,353 + Ac3H11_3287 0.69 +0.4 20,354 - Ac3H11_3287 0.69 +0.9 20,354 - Ac3H11_3287 0.69 +0.8 20,354 - Ac3H11_3287 0.69 -0.1 20,372 + Ac3H11_3287 0.73 +0.2 20,372 + Ac3H11_3287 0.73 -0.6 20,373 - Ac3H11_3287 0.73 +0.2 20,373 - Ac3H11_3287 0.73 -0.6
Or see this region's nucleotide sequence