Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2525

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2523 and Ac3H11_2524 are separated by 190 nucleotidesAc3H11_2524 and Ac3H11_2525 are separated by 1 nucleotidesAc3H11_2525 and Ac3H11_2526 are separated by 2 nucleotides Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712 _2523 Ac3H11_2524 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 801,903 to 802,598 _2524 Ac3H11_2525 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 802,600 to 803,385 _2525 Ac3H11_2526 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 803,388 to 804,713 _2526 Position (kb) 802 803 804Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 801.699 kb on + strandat 801.699 kb on + strandat 801.699 kb on + strandat 801.699 kb on + strandat 801.700 kb on - strandat 801.700 kb on - strandat 801.700 kb on - strandat 801.764 kb on + strandat 801.764 kb on + strandat 801.764 kb on + strandat 801.838 kb on - strandat 801.865 kb on - strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.931 kb on + strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.932 kb on - strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.935 kb on + strandat 801.936 kb on - strandat 802.081 kb on + strandat 802.082 kb on - strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.255 kb on + strand, within Ac3H11_2524at 802.256 kb on - strand, within Ac3H11_2524at 802.256 kb on - strand, within Ac3H11_2524at 802.256 kb on - strand, within Ac3H11_2524at 802.364 kb on - strand, within Ac3H11_2524at 802.364 kb on - strand, within Ac3H11_2524at 802.567 kb on + strandat 802.570 kb on + strandat 802.570 kb on + strandat 802.570 kb on + strandat 802.571 kb on - strandat 802.571 kb on - strandat 802.643 kb on + strandat 802.643 kb on + strandat 802.644 kb on - strandat 802.709 kb on + strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.710 kb on - strand, within Ac3H11_2525at 802.922 kb on + strand, within Ac3H11_2525at 802.923 kb on - strand, within Ac3H11_2525at 802.926 kb on + strand, within Ac3H11_2525at 802.926 kb on + strand, within Ac3H11_2525at 802.927 kb on - strand, within Ac3H11_2525at 803.036 kb on + strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.037 kb on - strand, within Ac3H11_2525at 803.043 kb on - strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.263 kb on + strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.264 kb on - strand, within Ac3H11_2525at 803.363 kb on + strandat 803.364 kb on - strandat 803.364 kb on - strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.389 kb on + strandat 803.390 kb on - strandat 803.390 kb on - strandat 803.421 kb on + strandat 803.421 kb on + strandat 803.422 kb on - strandat 803.422 kb on - strandat 803.599 kb on + strand, within Ac3H11_2526at 803.600 kb on - strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.749 kb on + strand, within Ac3H11_2526at 803.750 kb on - strand, within Ac3H11_2526at 803.750 kb on - strand, within Ac3H11_2526at 804.013 kb on + strand, within Ac3H11_2526at 804.013 kb on + strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.155 kb on - strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526at 804.157 kb on + strand, within Ac3H11_2526

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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801,699 + -0.5
801,699 + -2.2
801,699 + -1.1
801,699 + +0.3
801,700 - +1.3
801,700 - +0.1
801,700 - -0.4
801,764 + -1.2
801,764 + -0.3
801,764 + +2.6
801,838 - -3.3
801,865 - -0.2
801,931 + -0.2
801,931 + -1.3
801,931 + +0.1
801,931 + +1.8
801,931 + -1.7
801,931 + +1.0
801,931 + +0.3
801,931 + -0.3
801,931 + -0.6
801,931 + +2.1
801,932 - -0.7
801,932 - +0.7
801,932 - +0.2
801,932 - -0.5
801,932 - -1.6
801,932 - -3.3
801,932 - -4.2
801,932 - +0.8
801,932 - -1.1
801,932 - +0.8
801,935 + +0.4
801,935 + +0.5
801,935 + +0.5
801,935 + +0.8
801,935 + +0.2
801,935 + +0.7
801,935 + +1.3
801,935 + -0.1
801,936 - +0.7
802,081 + +0.3
802,082 - Ac3H11_2524 0.26 -0.8
802,255 + Ac3H11_2524 0.51 +0.8
802,255 + Ac3H11_2524 0.51 -0.3
802,255 + Ac3H11_2524 0.51 -0.6
802,255 + Ac3H11_2524 0.51 -2.3
802,255 + Ac3H11_2524 0.51 +2.7
802,255 + Ac3H11_2524 0.51 -0.7
802,255 + Ac3H11_2524 0.51 -1.7
802,256 - Ac3H11_2524 0.51 +0.3
802,256 - Ac3H11_2524 0.51 -1.2
802,256 - Ac3H11_2524 0.51 -1.1
802,364 - Ac3H11_2524 0.66 -0.9
802,364 - Ac3H11_2524 0.66 -1.1
802,567 + +1.0
802,570 + -0.6
802,570 + -1.1
802,570 + -0.6
802,571 - -1.1
802,571 - -1.3
802,643 + -0.8
802,643 + -1.7
802,644 - +0.3
802,709 + Ac3H11_2525 0.14 -2.1
802,710 - Ac3H11_2525 0.14 -1.2
802,710 - Ac3H11_2525 0.14 -0.6
802,710 - Ac3H11_2525 0.14 -0.2
802,922 + Ac3H11_2525 0.41 +1.6
802,923 - Ac3H11_2525 0.41 -0.1
802,926 + Ac3H11_2525 0.41 -2.3
802,926 + Ac3H11_2525 0.41 -1.6
802,927 - Ac3H11_2525 0.42 -0.1
803,036 + Ac3H11_2525 0.55 +0.2
803,037 - Ac3H11_2525 0.56 -0.6
803,037 - Ac3H11_2525 0.56 -0.8
803,037 - Ac3H11_2525 0.56 -1.7
803,043 - Ac3H11_2525 0.56 -1.6
803,263 + Ac3H11_2525 0.84 +0.8
803,263 + Ac3H11_2525 0.84 +0.3
803,263 + Ac3H11_2525 0.84 -1.1
803,264 - Ac3H11_2525 0.84 -1.0
803,264 - Ac3H11_2525 0.84 +2.5
803,264 - Ac3H11_2525 0.84 -0.8
803,363 + -0.3
803,364 - -3.4
803,364 - -1.3
803,389 + -0.7
803,389 + +1.0
803,389 + -1.8
803,389 + +0.4
803,390 - +0.3
803,390 - -1.3
803,421 + +0.4
803,421 + -0.5
803,422 - +0.5
803,422 - -3.6
803,599 + Ac3H11_2526 0.16 -0.5
803,600 - Ac3H11_2526 0.16 -1.0
803,749 + Ac3H11_2526 0.27 -0.3
803,749 + Ac3H11_2526 0.27 +0.5
803,749 + Ac3H11_2526 0.27 -1.3
803,750 - Ac3H11_2526 0.27 -1.8
803,750 - Ac3H11_2526 0.27 +0.2
804,013 + Ac3H11_2526 0.47 -0.3
804,013 + Ac3H11_2526 0.47 -0.7
804,155 - Ac3H11_2526 0.58 +1.1
804,155 - Ac3H11_2526 0.58 +0.1
804,155 - Ac3H11_2526 0.58 -1.0
804,157 + Ac3H11_2526 0.58 -0.1
804,157 + Ac3H11_2526 0.58 -0.8
804,157 + Ac3H11_2526 0.58 +1.5
804,157 + Ac3H11_2526 0.58 +1.3

Or see this region's nucleotide sequence