Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1801

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1800 and Ac3H11_1801 are separated by 110 nucleotidesAc3H11_1801 and Ac3H11_1802 are separated by 9 nucleotidesAc3H11_1802 and Ac3H11_1803 are separated by 19 nucleotides Ac3H11_1800 - GTP-binding protein HflX, at 20,887 to 22,008 _1800 Ac3H11_1801 - HflK protein, at 22,119 to 23,438 _1801 Ac3H11_1802 - HflC protein, at 23,448 to 24,356 _1802 Ac3H11_1803 - Putative inner membrane protein YjeT (clustered with HflC), at 24,376 to 24,564 _1803 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.433 kb on - strand, within Ac3H11_1800at 21.457 kb on + strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.511 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.600 kb on + strand, within Ac3H11_1800at 21.601 kb on - strand, within Ac3H11_1800at 21.612 kb on + strand, within Ac3H11_1800at 21.613 kb on - strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 22.084 kb on + strandat 22.084 kb on + strandat 22.084 kb on + strandat 22.085 kb on - strandat 22.109 kb on + strandat 22.109 kb on + strandat 22.109 kb on + strandat 22.110 kb on - strandat 22.110 kb on - strandat 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.696 kb on - strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.882 kb on - strand, within Ac3H11_1801at 23.020 kb on - strand, within Ac3H11_1801at 23.020 kb on - strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.085 kb on + strand, within Ac3H11_1801at 23.151 kb on + strand, within Ac3H11_1801at 23.151 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.187 kb on + strand, within Ac3H11_1801at 23.188 kb on - strand, within Ac3H11_1801at 23.188 kb on - strand, within Ac3H11_1801at 23.211 kb on + strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.212 kb on - strand, within Ac3H11_1801at 23.255 kb on + strand, within Ac3H11_1801at 23.255 kb on + strand, within Ac3H11_1801at 23.256 kb on - strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.265 kb on + strand, within Ac3H11_1801at 23.465 kb on + strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.748 kb on + strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.957 kb on + strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.178 kb on - strand, within Ac3H11_1802at 24.237 kb on + strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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21,232 + Ac3H11_1800 0.31 -0.7
21,232 + Ac3H11_1800 0.31 -0.6
21,232 + Ac3H11_1800 0.31 +0.7
21,232 + Ac3H11_1800 0.31 -3.1
21,232 + Ac3H11_1800 0.31 -0.7
21,232 + Ac3H11_1800 0.31 -1.9
21,232 + Ac3H11_1800 0.31 -0.4
21,232 + Ac3H11_1800 0.31 -0.4
21,233 - Ac3H11_1800 0.31 +1.7
21,233 - Ac3H11_1800 0.31 -0.1
21,233 - Ac3H11_1800 0.31 -1.5
21,233 - Ac3H11_1800 0.31 -1.5
21,233 - Ac3H11_1800 0.31 +0.0
21,233 - Ac3H11_1800 0.31 -1.0
21,233 - Ac3H11_1800 0.31 +0.6
21,233 - Ac3H11_1800 0.31 +0.4
21,233 - Ac3H11_1800 0.31 -2.1
21,233 - Ac3H11_1800 0.31 +0.1
21,363 + Ac3H11_1800 0.42 +0.1
21,363 + Ac3H11_1800 0.42 -0.3
21,363 + Ac3H11_1800 0.42 -1.0
21,364 - Ac3H11_1800 0.43 -0.5
21,364 - Ac3H11_1800 0.43 -2.5
21,432 + Ac3H11_1800 0.49 -0.5
21,432 + Ac3H11_1800 0.49 +0.4
21,433 - Ac3H11_1800 0.49 -2.2
21,457 + Ac3H11_1800 0.51 -2.2
21,458 - Ac3H11_1800 0.51 -1.4
21,458 - Ac3H11_1800 0.51 -1.9
21,458 - Ac3H11_1800 0.51 -0.9
21,511 + Ac3H11_1800 0.56 -1.7
21,562 + Ac3H11_1800 0.60 -0.4
21,562 + Ac3H11_1800 0.60 +0.5
21,562 + Ac3H11_1800 0.60 +0.6
21,562 + Ac3H11_1800 0.60 +0.6
21,563 - Ac3H11_1800 0.60 +1.8
21,563 - Ac3H11_1800 0.60 -1.5
21,600 + Ac3H11_1800 0.64 -0.3
21,601 - Ac3H11_1800 0.64 -0.8
21,612 + Ac3H11_1800 0.65 -1.2
21,613 - Ac3H11_1800 0.65 +0.7
21,850 + Ac3H11_1800 0.86 -1.1
21,850 + Ac3H11_1800 0.86 -0.9
21,850 + Ac3H11_1800 0.86 +0.6
21,850 + Ac3H11_1800 0.86 +0.3
21,851 - Ac3H11_1800 0.86 -0.5
21,851 - Ac3H11_1800 0.86 +0.8
21,851 - Ac3H11_1800 0.86 -0.6
21,851 - Ac3H11_1800 0.86 -0.8
22,084 + +0.8
22,084 + +1.6
22,084 + +1.0
22,085 - -1.3
22,109 + +1.7
22,109 + +0.5
22,109 + -1.0
22,110 - -1.1
22,110 - +1.0
22,503 + Ac3H11_1801 0.29 -0.8
22,503 + Ac3H11_1801 0.29 +0.9
22,503 + Ac3H11_1801 0.29 +2.2
22,504 - Ac3H11_1801 0.29 +0.9
22,504 - Ac3H11_1801 0.29 +0.7
22,504 - Ac3H11_1801 0.29 -0.2
22,696 - Ac3H11_1801 0.44 +0.1
22,881 + Ac3H11_1801 0.58 +0.2
22,881 + Ac3H11_1801 0.58 +0.5
22,881 + Ac3H11_1801 0.58 +1.2
22,882 - Ac3H11_1801 0.58 +1.2
23,020 - Ac3H11_1801 0.68 -1.5
23,020 - Ac3H11_1801 0.68 -0.9
23,085 + Ac3H11_1801 0.73 +0.9
23,085 + Ac3H11_1801 0.73 +0.4
23,085 + Ac3H11_1801 0.73 -0.1
23,085 + Ac3H11_1801 0.73 +1.2
23,085 + Ac3H11_1801 0.73 -0.4
23,085 + Ac3H11_1801 0.73 +0.3
23,151 + Ac3H11_1801 0.78 -0.7
23,151 + Ac3H11_1801 0.78 +0.7
23,187 + Ac3H11_1801 0.81 +1.1
23,187 + Ac3H11_1801 0.81 -0.2
23,187 + Ac3H11_1801 0.81 +1.1
23,188 - Ac3H11_1801 0.81 -1.6
23,188 - Ac3H11_1801 0.81 +1.8
23,211 + Ac3H11_1801 0.83 +0.0
23,212 - Ac3H11_1801 0.83 -1.5
23,212 - Ac3H11_1801 0.83 +0.9
23,212 - Ac3H11_1801 0.83 +1.0
23,212 - Ac3H11_1801 0.83 +1.2
23,255 + Ac3H11_1801 0.86 +0.0
23,255 + Ac3H11_1801 0.86 +2.0
23,256 - Ac3H11_1801 0.86 +0.1
23,265 + Ac3H11_1801 0.87 +0.9
23,265 + Ac3H11_1801 0.87 +1.3
23,265 + Ac3H11_1801 0.87 +0.8
23,265 + Ac3H11_1801 0.87 +0.4
23,265 + Ac3H11_1801 0.87 -0.2
23,465 + +1.4
23,466 - -0.4
23,466 - -1.6
23,466 - -0.9
23,466 - +1.4
23,466 - -1.6
23,466 - +0.8
23,547 + Ac3H11_1802 0.11 +1.5
23,547 + Ac3H11_1802 0.11 +0.8
23,547 + Ac3H11_1802 0.11 -0.1
23,548 - Ac3H11_1802 0.11 +2.9
23,548 - Ac3H11_1802 0.11 +0.2
23,548 - Ac3H11_1802 0.11 -1.0
23,548 - Ac3H11_1802 0.11 -0.0
23,548 - Ac3H11_1802 0.11 -0.6
23,548 - Ac3H11_1802 0.11 -0.0
23,548 - Ac3H11_1802 0.11 -1.1
23,628 + Ac3H11_1802 0.20 -1.4
23,628 + Ac3H11_1802 0.20 +0.9
23,628 + Ac3H11_1802 0.20 +0.7
23,628 + Ac3H11_1802 0.20 -1.4
23,628 + Ac3H11_1802 0.20 +0.0
23,628 + Ac3H11_1802 0.20 -0.4
23,629 - Ac3H11_1802 0.20 -3.2
23,629 - Ac3H11_1802 0.20 +0.8
23,629 - Ac3H11_1802 0.20 +1.0
23,629 - Ac3H11_1802 0.20 +2.8
23,629 - Ac3H11_1802 0.20 -0.9
23,629 - Ac3H11_1802 0.20 +0.6
23,629 - Ac3H11_1802 0.20 +0.1
23,629 - Ac3H11_1802 0.20 +0.6
23,629 - Ac3H11_1802 0.20 -0.6
23,715 + Ac3H11_1802 0.29 +2.0
23,715 + Ac3H11_1802 0.29 +0.7
23,715 + Ac3H11_1802 0.29 -0.2
23,716 - Ac3H11_1802 0.29 -1.0
23,716 - Ac3H11_1802 0.29 +1.1
23,716 - Ac3H11_1802 0.29 -0.2
23,716 - Ac3H11_1802 0.29 -0.4
23,748 + Ac3H11_1802 0.33 +0.2
23,749 - Ac3H11_1802 0.33 -1.1
23,749 - Ac3H11_1802 0.33 -0.0
23,749 - Ac3H11_1802 0.33 +1.6
23,957 + Ac3H11_1802 0.56 +1.1
23,958 - Ac3H11_1802 0.56 +0.8
23,958 - Ac3H11_1802 0.56 -0.3
23,958 - Ac3H11_1802 0.56 +2.8
23,973 + Ac3H11_1802 0.58 +0.0
23,973 + Ac3H11_1802 0.58 +2.2
23,973 + Ac3H11_1802 0.58 +1.2
23,973 + Ac3H11_1802 0.58 -0.5
23,974 - Ac3H11_1802 0.58 +0.9
23,974 - Ac3H11_1802 0.58 +1.1
23,974 - Ac3H11_1802 0.58 +0.4
23,974 - Ac3H11_1802 0.58 -1.4
24,123 + Ac3H11_1802 0.74 -0.0
24,123 + Ac3H11_1802 0.74 +2.5
24,178 - Ac3H11_1802 0.80 +2.0
24,237 + Ac3H11_1802 0.87 +0.2
24,238 - Ac3H11_1802 0.87 +1.1
24,238 - Ac3H11_1802 0.87 -0.3
24,238 - Ac3H11_1802 0.87 +0.1
24,238 - Ac3H11_1802 0.87 +1.6
24,354 + -0.3
24,354 + -0.2
24,354 + -2.0
24,354 + +1.2
24,354 + +1.1
24,354 + -2.9
24,354 + +0.2
24,355 - -0.4
24,355 - -0.6
24,355 - -0.9
24,355 - +0.6
24,355 - -1.6
24,355 - -0.6

Or see this region's nucleotide sequence