Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1384

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1383 and Ac3H11_1384 overlap by 4 nucleotidesAc3H11_1384 and Ac3H11_1385 overlap by 4 nucleotides Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217 _1383 Ac3H11_1384 - Flagellar biosynthesis protein FlhA, at 72,214 to 74,295 _1384 Ac3H11_1385 - Flagellar biosynthesis protein FlhB, at 74,292 to 75,446 _1385 Position (kb) 72 73 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 71.244 kb on + strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.505 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 72.231 kb on + strandat 72.533 kb on + strand, within Ac3H11_1384at 72.533 kb on + strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.868 kb on - strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.135 kb on + strand, within Ac3H11_1384at 73.332 kb on - strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.282 kb on - strandat 74.282 kb on - strandat 74.295 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.411 kb on - strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.444 kb on - strand, within Ac3H11_1385at 74.485 kb on + strand, within Ac3H11_1385at 74.485 kb on + strand, within Ac3H11_1385at 74.486 kb on - strand, within Ac3H11_1385at 74.486 kb on - strand, within Ac3H11_1385at 74.617 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.954 kb on + strand, within Ac3H11_1385at 74.954 kb on + strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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71,244 + Ac3H11_1383 0.36 +1.0
71,245 - Ac3H11_1383 0.36 -1.0
71,245 - Ac3H11_1383 0.36 -1.3
71,376 + Ac3H11_1383 0.45 -0.4
71,376 + Ac3H11_1383 0.45 +0.9
71,377 - Ac3H11_1383 0.45 -3.6
71,377 - Ac3H11_1383 0.45 -0.1
71,505 + Ac3H11_1383 0.53 +4.2
71,880 + Ac3H11_1383 0.78 +0.3
71,880 + Ac3H11_1383 0.78 +0.7
71,880 + Ac3H11_1383 0.78 -0.5
71,880 + Ac3H11_1383 0.78 -0.9
71,880 + Ac3H11_1383 0.78 -0.4
71,881 - Ac3H11_1383 0.78 -0.2
71,881 - Ac3H11_1383 0.78 -2.8
71,881 - Ac3H11_1383 0.78 -1.2
71,881 - Ac3H11_1383 0.78 +0.1
71,881 - Ac3H11_1383 0.78 -0.6
72,231 + +0.8
72,533 + Ac3H11_1384 0.15 -1.4
72,533 + Ac3H11_1384 0.15 -0.0
72,534 - Ac3H11_1384 0.15 -0.1
72,534 - Ac3H11_1384 0.15 +0.3
72,534 - Ac3H11_1384 0.15 -1.3
72,534 - Ac3H11_1384 0.15 -1.4
72,867 + Ac3H11_1384 0.31 -0.8
72,867 + Ac3H11_1384 0.31 +0.7
72,867 + Ac3H11_1384 0.31 -0.5
72,867 + Ac3H11_1384 0.31 +0.1
72,868 - Ac3H11_1384 0.31 +1.0
73,111 + Ac3H11_1384 0.43 +0.2
73,111 + Ac3H11_1384 0.43 +0.4
73,111 + Ac3H11_1384 0.43 -3.8
73,111 + Ac3H11_1384 0.43 -0.0
73,112 - Ac3H11_1384 0.43 -0.9
73,112 - Ac3H11_1384 0.43 +0.4
73,112 - Ac3H11_1384 0.43 +0.0
73,112 - Ac3H11_1384 0.43 -2.7
73,112 - Ac3H11_1384 0.43 -1.4
73,112 - Ac3H11_1384 0.43 -1.1
73,135 + Ac3H11_1384 0.44 +1.6
73,332 - Ac3H11_1384 0.54 -1.5
73,571 + Ac3H11_1384 0.65 +0.1
73,571 + Ac3H11_1384 0.65 +0.5
73,571 + Ac3H11_1384 0.65 -1.5
73,571 + Ac3H11_1384 0.65 -1.6
73,571 + Ac3H11_1384 0.65 -0.1
73,571 + Ac3H11_1384 0.65 +0.1
73,571 + Ac3H11_1384 0.65 +0.1
73,571 + Ac3H11_1384 0.65 -0.3
73,572 - Ac3H11_1384 0.65 -1.4
73,572 - Ac3H11_1384 0.65 -0.5
73,572 - Ac3H11_1384 0.65 -0.2
73,572 - Ac3H11_1384 0.65 +0.2
73,572 - Ac3H11_1384 0.65 -0.6
73,572 - Ac3H11_1384 0.65 -1.6
73,572 - Ac3H11_1384 0.65 -0.4
73,572 - Ac3H11_1384 0.65 -0.7
73,572 - Ac3H11_1384 0.65 -0.8
73,572 - Ac3H11_1384 0.65 -0.2
73,572 - Ac3H11_1384 0.65 +1.7
73,572 - Ac3H11_1384 0.65 +1.4
74,105 + +2.1
74,105 + -1.1
74,105 + -0.8
74,105 + +0.8
74,105 + +0.7
74,106 - +1.3
74,106 - -2.2
74,106 - -2.5
74,106 - -1.3
74,106 - +0.1
74,282 - -0.3
74,282 - -2.3
74,295 + -2.8
74,350 + -0.2
74,350 + -0.6
74,350 + +0.4
74,350 + -0.6
74,350 + +0.1
74,350 + -0.9
74,351 - -3.1
74,351 - -0.6
74,351 - +0.3
74,351 - -0.6
74,351 - +0.6
74,351 - +1.3
74,411 - Ac3H11_1385 0.10 +0.3
74,416 + Ac3H11_1385 0.11 -1.1
74,416 + Ac3H11_1385 0.11 -2.5
74,416 + Ac3H11_1385 0.11 -1.2
74,416 + Ac3H11_1385 0.11 -0.5
74,416 + Ac3H11_1385 0.11 +0.1
74,416 + Ac3H11_1385 0.11 +0.5
74,416 + Ac3H11_1385 0.11 +0.4
74,416 + Ac3H11_1385 0.11 -1.5
74,416 + Ac3H11_1385 0.11 -0.5
74,416 + Ac3H11_1385 0.11 -3.3
74,416 + Ac3H11_1385 0.11 -0.2
74,417 - Ac3H11_1385 0.11 -0.9
74,417 - Ac3H11_1385 0.11 -0.8
74,417 - Ac3H11_1385 0.11 -1.2
74,417 - Ac3H11_1385 0.11 -0.4
74,417 - Ac3H11_1385 0.11 -1.8
74,417 - Ac3H11_1385 0.11 +0.8
74,417 - Ac3H11_1385 0.11 +0.4
74,417 - Ac3H11_1385 0.11 +0.3
74,443 + Ac3H11_1385 0.13 +0.8
74,443 + Ac3H11_1385 0.13 +0.1
74,443 + Ac3H11_1385 0.13 -1.1
74,444 - Ac3H11_1385 0.13 +0.3
74,485 + Ac3H11_1385 0.17 -0.7
74,485 + Ac3H11_1385 0.17 -1.8
74,486 - Ac3H11_1385 0.17 -0.5
74,486 - Ac3H11_1385 0.17 -0.5
74,617 + Ac3H11_1385 0.28 +0.3
74,635 + Ac3H11_1385 0.30 -0.2
74,635 + Ac3H11_1385 0.30 +1.7
74,635 + Ac3H11_1385 0.30 -0.9
74,636 - Ac3H11_1385 0.30 -1.7
74,636 - Ac3H11_1385 0.30 -1.1
74,636 - Ac3H11_1385 0.30 -0.0
74,954 + Ac3H11_1385 0.57 -0.9
74,954 + Ac3H11_1385 0.57 -0.5
74,955 - Ac3H11_1385 0.57 -0.4
74,955 - Ac3H11_1385 0.57 -0.9
74,955 - Ac3H11_1385 0.57 -2.5
74,955 - Ac3H11_1385 0.57 -0.7

Or see this region's nucleotide sequence