Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1383

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1381 and Ac3H11_1382 are separated by 27 nucleotidesAc3H11_1382 and Ac3H11_1383 overlap by 8 nucleotidesAc3H11_1383 and Ac3H11_1384 overlap by 4 nucleotides Ac3H11_1381 - RNA polymerase sigma factor for flagellar operon, at 69,160 to 69,876 _1381 Ac3H11_1382 - FIG00538194: hypothetical protein, at 69,904 to 70,701 _1382 Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217 _1383 Ac3H11_1384 - Flagellar biosynthesis protein FlhA, at 72,214 to 74,295 _1384 Position (kb) 70 71 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 69.872 kb on + strandat 69.872 kb on + strandat 69.872 kb on + strandat 69.872 kb on + strandat 69.873 kb on - strandat 69.873 kb on - strandat 69.873 kb on - strandat 70.208 kb on + strand, within Ac3H11_1382at 70.208 kb on + strand, within Ac3H11_1382at 70.208 kb on + strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.323 kb on - strand, within Ac3H11_1382at 70.323 kb on - strand, within Ac3H11_1382at 70.334 kb on + strand, within Ac3H11_1382at 70.551 kb on - strand, within Ac3H11_1382at 71.211 kb on + strand, within Ac3H11_1383at 71.212 kb on - strand, within Ac3H11_1383at 71.212 kb on - strand, within Ac3H11_1383at 71.244 kb on + strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.505 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.880 kb on + strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 71.881 kb on - strand, within Ac3H11_1383at 72.231 kb on + strandat 72.533 kb on + strand, within Ac3H11_1384at 72.533 kb on + strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.534 kb on - strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.867 kb on + strand, within Ac3H11_1384at 72.868 kb on - strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.111 kb on + strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.112 kb on - strand, within Ac3H11_1384at 73.135 kb on + strand, within Ac3H11_1384

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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69,872 + +0.8
69,872 + +0.1
69,872 + -0.9
69,872 + +1.4
69,873 - -1.7
69,873 - +0.7
69,873 - -0.2
70,208 + Ac3H11_1382 0.38 -0.4
70,208 + Ac3H11_1382 0.38 +0.1
70,208 + Ac3H11_1382 0.38 +0.6
70,209 - Ac3H11_1382 0.38 +0.8
70,209 - Ac3H11_1382 0.38 -1.1
70,209 - Ac3H11_1382 0.38 +1.2
70,209 - Ac3H11_1382 0.38 +1.5
70,322 + Ac3H11_1382 0.52 -1.2
70,322 + Ac3H11_1382 0.52 -1.0
70,322 + Ac3H11_1382 0.52 -3.0
70,323 - Ac3H11_1382 0.53 -0.2
70,323 - Ac3H11_1382 0.53 +0.4
70,334 + Ac3H11_1382 0.54 +0.2
70,551 - Ac3H11_1382 0.81 -1.1
71,211 + Ac3H11_1383 0.34 -1.4
71,212 - Ac3H11_1383 0.34 +2.4
71,212 - Ac3H11_1383 0.34 -2.1
71,244 + Ac3H11_1383 0.36 +1.0
71,245 - Ac3H11_1383 0.36 -1.0
71,245 - Ac3H11_1383 0.36 -1.3
71,376 + Ac3H11_1383 0.45 -0.4
71,376 + Ac3H11_1383 0.45 +0.9
71,377 - Ac3H11_1383 0.45 -3.6
71,377 - Ac3H11_1383 0.45 -0.1
71,505 + Ac3H11_1383 0.53 +4.2
71,880 + Ac3H11_1383 0.78 +0.3
71,880 + Ac3H11_1383 0.78 +0.7
71,880 + Ac3H11_1383 0.78 -0.5
71,880 + Ac3H11_1383 0.78 -0.9
71,880 + Ac3H11_1383 0.78 -0.4
71,881 - Ac3H11_1383 0.78 -0.2
71,881 - Ac3H11_1383 0.78 -2.8
71,881 - Ac3H11_1383 0.78 -1.2
71,881 - Ac3H11_1383 0.78 +0.1
71,881 - Ac3H11_1383 0.78 -0.6
72,231 + +0.8
72,533 + Ac3H11_1384 0.15 -1.4
72,533 + Ac3H11_1384 0.15 -0.0
72,534 - Ac3H11_1384 0.15 -0.1
72,534 - Ac3H11_1384 0.15 +0.3
72,534 - Ac3H11_1384 0.15 -1.3
72,534 - Ac3H11_1384 0.15 -1.4
72,867 + Ac3H11_1384 0.31 -0.8
72,867 + Ac3H11_1384 0.31 +0.7
72,867 + Ac3H11_1384 0.31 -0.5
72,867 + Ac3H11_1384 0.31 +0.1
72,868 - Ac3H11_1384 0.31 +1.0
73,111 + Ac3H11_1384 0.43 +0.2
73,111 + Ac3H11_1384 0.43 +0.4
73,111 + Ac3H11_1384 0.43 -3.8
73,111 + Ac3H11_1384 0.43 -0.0
73,112 - Ac3H11_1384 0.43 -0.9
73,112 - Ac3H11_1384 0.43 +0.4
73,112 - Ac3H11_1384 0.43 +0.0
73,112 - Ac3H11_1384 0.43 -2.7
73,112 - Ac3H11_1384 0.43 -1.4
73,112 - Ac3H11_1384 0.43 -1.1
73,135 + Ac3H11_1384 0.44 +1.6

Or see this region's nucleotide sequence