Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27650

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27640 and AO353_27645 are separated by 259 nucleotidesAO353_27645 and AO353_27650 are separated by 58 nucleotidesAO353_27650 and AO353_27655 are separated by 329 nucleotides AO353_27640: AO353_27640 - recombination factor protein RarA, at 6,022,649 to 6,023,974 _27640 AO353_27645: AO353_27645 - outer membrane lipoprotein carrier protein LolA, at 6,024,234 to 6,024,857 _27645 AO353_27650: AO353_27650 - cell division protein FtsK, at 6,024,916 to 6,027,321 _27650 AO353_27655: AO353_27655 - thioredoxin reductase, at 6,027,651 to 6,028,601 _27655 Position (kb) 6024 6025 6026 6027 6028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6023.979 kb on + strandat 6023.986 kb on - strandat 6023.999 kb on - strandat 6024.063 kb on + strandat 6024.139 kb on + strandat 6024.139 kb on + strandat 6024.153 kb on + strandat 6024.153 kb on + strandat 6024.178 kb on + strandat 6024.178 kb on + strandat 6024.178 kb on + strandat 6024.178 kb on + strandat 6024.178 kb on + strandat 6024.178 kb on + strandat 6024.179 kb on - strandat 6024.179 kb on - strandat 6024.179 kb on - strandat 6024.236 kb on - strandat 6024.236 kb on - strandat 6024.236 kb on - strandat 6024.236 kb on - strandat 6024.874 kb on - strandat 6024.928 kb on - strandat 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.308 kb on - strand, within AO353_27650at 6025.632 kb on - strand, within AO353_27650at 6026.052 kb on - strand, within AO353_27650at 6026.426 kb on - strand, within AO353_27650at 6026.426 kb on - strand, within AO353_27650at 6027.067 kb on - strand, within AO353_27650at 6027.067 kb on - strand, within AO353_27650at 6027.140 kb on - strandat 6027.160 kb on - strandat 6027.189 kb on - strandat 6027.189 kb on - strandat 6027.396 kb on - strandat 6027.430 kb on - strandat 6027.486 kb on - strandat 6027.513 kb on - strandat 6027.528 kb on - strandat 6027.564 kb on - strandat 6027.564 kb on - strandat 6027.564 kb on - strandat 6027.564 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.571 kb on - strandat 6027.663 kb on - strandat 6027.663 kb on - strandat 6027.720 kb on + strandat 6027.752 kb on + strand, within AO353_27655at 6027.753 kb on - strand, within AO353_27655at 6027.753 kb on - strand, within AO353_27655at 6027.753 kb on - strand, within AO353_27655at 6027.895 kb on - strand, within AO353_27655at 6027.895 kb on - strand, within AO353_27655at 6027.895 kb on - strand, within AO353_27655at 6027.960 kb on + strand, within AO353_27655at 6027.960 kb on + strand, within AO353_27655at 6027.960 kb on + strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6027.961 kb on - strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.005 kb on + strand, within AO353_27655at 6028.006 kb on - strand, within AO353_27655at 6028.140 kb on + strand, within AO353_27655at 6028.140 kb on + strand, within AO353_27655at 6028.140 kb on + strand, within AO353_27655at 6028.140 kb on + strand, within AO353_27655at 6028.141 kb on - strandat 6028.141 kb on - strand, within AO353_27655at 6028.141 kb on - strand, within AO353_27655at 6028.141 kb on - strand, within AO353_27655at 6028.282 kb on + strand, within AO353_27655at 6028.282 kb on + strand, within AO353_27655at 6028.282 kb on + strand, within AO353_27655at 6028.283 kb on - strand, within AO353_27655at 6028.283 kb on - strand, within AO353_27655

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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6,023,979 + +0.4
6,023,986 - -0.6
6,023,999 - +0.4
6,024,063 + +1.8
6,024,139 + +0.6
6,024,139 + -0.1
6,024,153 + +0.3
6,024,153 + +1.2
6,024,178 + +0.4
6,024,178 + +1.7
6,024,178 + +0.9
6,024,178 + -1.0
6,024,178 + +0.6
6,024,178 + -0.1
6,024,179 - +0.6
6,024,179 - -0.8
6,024,179 - -0.4
6,024,236 - -0.4
6,024,236 - -0.6
6,024,236 - -1.2
6,024,236 - +0.2
6,024,874 - +1.0
6,024,928 - -0.1
6,025,308 - AO353_27650 0.16 +1.0
6,025,308 - AO353_27650 0.16 -1.2
6,025,308 - AO353_27650 0.16 -2.2
6,025,308 - AO353_27650 0.16 -2.6
6,025,308 - AO353_27650 0.16 +1.0
6,025,308 - AO353_27650 0.16 +0.0
6,025,308 - AO353_27650 0.16 -2.0
6,025,308 - AO353_27650 0.16 +0.4
6,025,308 - AO353_27650 0.16 +0.0
6,025,308 - AO353_27650 0.16 -2.2
6,025,632 - AO353_27650 0.30 -1.3
6,026,052 - AO353_27650 0.47 -1.6
6,026,426 - AO353_27650 0.63 -2.1
6,026,426 - AO353_27650 0.63 -0.8
6,027,067 - AO353_27650 0.89 -0.1
6,027,067 - AO353_27650 0.89 -1.6
6,027,140 - -2.0
6,027,160 - -0.8
6,027,189 - +0.0
6,027,189 - -2.0
6,027,396 - -0.7
6,027,430 - -0.6
6,027,486 - +0.0
6,027,513 - -0.2
6,027,528 - +0.1
6,027,564 - -3.2
6,027,564 - -1.1
6,027,564 - +1.0
6,027,564 - +0.2
6,027,571 - +2.6
6,027,571 - -1.0
6,027,571 - +0.1
6,027,571 - -0.4
6,027,571 - +0.6
6,027,571 - -1.0
6,027,571 - -0.4
6,027,571 - -0.9
6,027,663 - -0.1
6,027,663 - +0.0
6,027,720 + +0.0
6,027,752 + AO353_27655 0.11 -1.2
6,027,753 - AO353_27655 0.11 -0.1
6,027,753 - AO353_27655 0.11 -1.0
6,027,753 - AO353_27655 0.11 +0.1
6,027,895 - AO353_27655 0.26 +0.0
6,027,895 - AO353_27655 0.26 -2.0
6,027,895 - AO353_27655 0.26 -1.0
6,027,960 + AO353_27655 0.32 -0.2
6,027,960 + AO353_27655 0.32 +0.3
6,027,960 + AO353_27655 0.32 +0.0
6,027,961 - AO353_27655 0.33 -0.4
6,027,961 - AO353_27655 0.33 +0.5
6,027,961 - AO353_27655 0.33 -0.2
6,027,961 - AO353_27655 0.33 -1.2
6,027,961 - AO353_27655 0.33 +0.3
6,027,961 - AO353_27655 0.33 -0.3
6,027,961 - AO353_27655 0.33 -0.4
6,027,961 - AO353_27655 0.33 +0.4
6,027,961 - AO353_27655 0.33 -1.4
6,027,961 - AO353_27655 0.33 +1.8
6,027,961 - AO353_27655 0.33 -0.5
6,027,961 - AO353_27655 0.33 -0.7
6,028,005 + AO353_27655 0.37 -0.6
6,028,005 + AO353_27655 0.37 +1.0
6,028,005 + AO353_27655 0.37 +0.1
6,028,005 + AO353_27655 0.37 -0.2
6,028,005 + AO353_27655 0.37 -0.6
6,028,005 + AO353_27655 0.37 -1.1
6,028,006 - AO353_27655 0.37 +0.5
6,028,140 + AO353_27655 0.51 -0.6
6,028,140 + AO353_27655 0.51 -0.4
6,028,140 + AO353_27655 0.51 -0.4
6,028,140 + AO353_27655 0.51 +2.3
6,028,141 - -1.6
6,028,141 - AO353_27655 0.52 +0.6
6,028,141 - AO353_27655 0.52 -0.3
6,028,141 - AO353_27655 0.52 +0.0
6,028,282 + AO353_27655 0.66 +0.7
6,028,282 + AO353_27655 0.66 +0.0
6,028,282 + AO353_27655 0.66 -0.4
6,028,283 - AO353_27655 0.66 -0.9
6,028,283 - AO353_27655 0.66 +0.3

Or see this region's nucleotide sequence