Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27580

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27570 and AO353_27575 are separated by 11 nucleotidesAO353_27575 and AO353_27580 are separated by 200 nucleotidesAO353_27580 and AO353_27585 are separated by 59 nucleotidesAO353_27585 and AO353_27590 are separated by 3 nucleotides AO353_27570: AO353_27570 - GCN5 family acetyltransferase, at 6,013,633 to 6,014,076 _27570 AO353_27575: AO353_27575 - hypothetical protein, at 6,014,088 to 6,014,426 _27575 AO353_27580: AO353_27580 - hypothetical protein, at 6,014,627 to 6,014,875 _27580 AO353_27585: AO353_27585 - DNA repair protein, at 6,014,935 to 6,015,264 _27585 AO353_27590: AO353_27590 - hypothetical protein, at 6,015,268 to 6,015,972 _27590 Position (kb) 6014 6015Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6013.640 kb on + strandat 6013.640 kb on + strandat 6013.640 kb on + strandat 6013.641 kb on - strandat 6013.641 kb on - strandat 6013.641 kb on - strandat 6013.641 kb on - strandat 6013.641 kb on - strandat 6013.708 kb on + strand, within AO353_27570at 6013.709 kb on - strand, within AO353_27570at 6013.709 kb on - strand, within AO353_27570at 6013.798 kb on + strand, within AO353_27570at 6013.813 kb on + strand, within AO353_27570at 6013.814 kb on - strand, within AO353_27570at 6013.814 kb on - strand, within AO353_27570at 6013.933 kb on + strand, within AO353_27570at 6013.933 kb on + strand, within AO353_27570at 6013.933 kb on + strand, within AO353_27570at 6013.934 kb on - strand, within AO353_27570at 6013.934 kb on - strand, within AO353_27570at 6013.969 kb on + strand, within AO353_27570at 6013.969 kb on + strand, within AO353_27570at 6013.970 kb on - strand, within AO353_27570at 6014.149 kb on + strand, within AO353_27575at 6014.149 kb on + strand, within AO353_27575at 6014.150 kb on - strand, within AO353_27575at 6014.153 kb on - strand, within AO353_27575at 6014.338 kb on + strand, within AO353_27575at 6014.338 kb on + strandat 6014.338 kb on + strand, within AO353_27575at 6014.339 kb on - strand, within AO353_27575at 6014.339 kb on - strand, within AO353_27575at 6014.420 kb on + strandat 6014.420 kb on + strandat 6014.421 kb on - strandat 6014.437 kb on + strandat 6014.438 kb on - strandat 6014.457 kb on + strandat 6014.458 kb on - strandat 6014.458 kb on - strandat 6014.458 kb on - strandat 6014.521 kb on + strandat 6014.521 kb on + strandat 6014.522 kb on - strandat 6014.522 kb on - strandat 6014.533 kb on + strandat 6014.533 kb on + strandat 6014.534 kb on - strandat 6014.534 kb on - strandat 6014.540 kb on + strandat 6014.540 kb on + strandat 6014.540 kb on + strandat 6014.540 kb on + strandat 6014.541 kb on - strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.542 kb on + strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.543 kb on - strandat 6014.586 kb on + strandat 6014.586 kb on + strandat 6014.586 kb on + strandat 6014.586 kb on + strandat 6014.586 kb on + strandat 6014.587 kb on - strandat 6014.587 kb on - strandat 6014.649 kb on - strandat 6014.667 kb on - strand, within AO353_27580at 6014.750 kb on + strand, within AO353_27580at 6014.750 kb on + strand, within AO353_27580at 6014.751 kb on - strand, within AO353_27580at 6014.751 kb on - strand, within AO353_27580at 6014.807 kb on + strand, within AO353_27580at 6014.807 kb on + strand, within AO353_27580at 6014.807 kb on + strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.808 kb on - strand, within AO353_27580at 6014.910 kb on - strandat 6015.169 kb on + strand, within AO353_27585at 6015.169 kb on + strand, within AO353_27585at 6015.169 kb on + strand, within AO353_27585at 6015.169 kb on + strand, within AO353_27585at 6015.170 kb on - strand, within AO353_27585at 6015.286 kb on - strandat 6015.342 kb on + strandat 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.343 kb on - strand, within AO353_27590at 6015.399 kb on + strand, within AO353_27590at 6015.542 kb on + strand, within AO353_27590at 6015.542 kb on + strand, within AO353_27590at 6015.543 kb on - strand, within AO353_27590at 6015.634 kb on - strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.724 kb on + strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590at 6015.725 kb on - strand, within AO353_27590

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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6,013,640 + -1.0
6,013,640 + +0.0
6,013,640 + +0.1
6,013,641 - -1.0
6,013,641 - -0.1
6,013,641 - +0.3
6,013,641 - +1.6
6,013,641 - +0.8
6,013,708 + AO353_27570 0.17 -0.4
6,013,709 - AO353_27570 0.17 -0.6
6,013,709 - AO353_27570 0.17 +0.3
6,013,798 + AO353_27570 0.37 -0.2
6,013,813 + AO353_27570 0.41 +0.8
6,013,814 - AO353_27570 0.41 +1.4
6,013,814 - AO353_27570 0.41 -1.3
6,013,933 + AO353_27570 0.68 -0.9
6,013,933 + AO353_27570 0.68 -1.2
6,013,933 + AO353_27570 0.68 +0.2
6,013,934 - AO353_27570 0.68 -0.2
6,013,934 - AO353_27570 0.68 +0.6
6,013,969 + AO353_27570 0.76 +1.4
6,013,969 + AO353_27570 0.76 -2.1
6,013,970 - AO353_27570 0.76 +0.3
6,014,149 + AO353_27575 0.18 -0.4
6,014,149 + AO353_27575 0.18 -2.2
6,014,150 - AO353_27575 0.18 -0.9
6,014,153 - AO353_27575 0.19 +1.2
6,014,338 + AO353_27575 0.74 -0.1
6,014,338 + +0.0
6,014,338 + AO353_27575 0.74 -0.3
6,014,339 - AO353_27575 0.74 +0.0
6,014,339 - AO353_27575 0.74 +0.2
6,014,420 + -0.8
6,014,420 + +0.6
6,014,421 - -1.1
6,014,437 + -1.0
6,014,438 - +0.0
6,014,457 + -0.6
6,014,458 - -0.4
6,014,458 - +0.8
6,014,458 - -1.0
6,014,521 + +0.7
6,014,521 + -0.2
6,014,522 - -0.2
6,014,522 - +0.0
6,014,533 + +0.2
6,014,533 + +0.4
6,014,534 - +0.7
6,014,534 - -0.8
6,014,540 + +1.0
6,014,540 + -0.1
6,014,540 + +0.6
6,014,540 + -1.0
6,014,541 - +0.0
6,014,542 + -0.6
6,014,542 + -0.1
6,014,542 + +1.0
6,014,542 + -0.9
6,014,542 + +2.6
6,014,542 + +0.0
6,014,542 + +0.0
6,014,543 - -0.6
6,014,543 - +0.0
6,014,543 - -1.6
6,014,543 - +0.7
6,014,543 - +0.0
6,014,543 - +1.3
6,014,543 - +0.4
6,014,543 - -0.4
6,014,543 - -0.7
6,014,543 - -0.9
6,014,543 - +1.7
6,014,543 - +1.0
6,014,586 + -1.0
6,014,586 + -1.0
6,014,586 + +0.4
6,014,586 + +0.0
6,014,586 + +0.4
6,014,587 - +0.4
6,014,587 - -1.4
6,014,649 - +0.7
6,014,667 - AO353_27580 0.16 -1.3
6,014,750 + AO353_27580 0.49 +1.0
6,014,750 + AO353_27580 0.49 +0.4
6,014,751 - AO353_27580 0.50 -0.2
6,014,751 - AO353_27580 0.50 -0.3
6,014,807 + AO353_27580 0.72 -0.3
6,014,807 + AO353_27580 0.72 -0.4
6,014,807 + AO353_27580 0.72 +0.5
6,014,808 - AO353_27580 0.73 +1.0
6,014,808 - AO353_27580 0.73 +0.3
6,014,808 - AO353_27580 0.73 +3.0
6,014,808 - AO353_27580 0.73 +2.2
6,014,808 - AO353_27580 0.73 +0.5
6,014,808 - AO353_27580 0.73 -0.4
6,014,910 - +1.4
6,015,169 + AO353_27585 0.71 +0.1
6,015,169 + AO353_27585 0.71 +1.6
6,015,169 + AO353_27585 0.71 +0.6
6,015,169 + AO353_27585 0.71 -0.8
6,015,170 - AO353_27585 0.71 -0.9
6,015,286 - +1.0
6,015,342 + +0.0
6,015,343 - AO353_27590 0.11 -1.0
6,015,343 - AO353_27590 0.11 +1.3
6,015,343 - AO353_27590 0.11 -0.4
6,015,343 - AO353_27590 0.11 +0.4
6,015,343 - AO353_27590 0.11 -1.0
6,015,343 - AO353_27590 0.11 +0.4
6,015,343 - AO353_27590 0.11 -0.1
6,015,399 + AO353_27590 0.19 +0.1
6,015,542 + AO353_27590 0.39 +1.2
6,015,542 + AO353_27590 0.39 +1.2
6,015,543 - AO353_27590 0.39 +2.0
6,015,634 - AO353_27590 0.52 -0.1
6,015,724 + AO353_27590 0.65 -1.1
6,015,724 + AO353_27590 0.65 -0.3
6,015,724 + AO353_27590 0.65 -0.6
6,015,724 + AO353_27590 0.65 +1.3
6,015,724 + AO353_27590 0.65 +0.4
6,015,724 + AO353_27590 0.65 +0.7
6,015,724 + AO353_27590 0.65 -1.3
6,015,724 + AO353_27590 0.65 +1.0
6,015,724 + AO353_27590 0.65 +0.1
6,015,724 + AO353_27590 0.65 +1.0
6,015,724 + AO353_27590 0.65 +0.7
6,015,724 + AO353_27590 0.65 +0.0
6,015,724 + AO353_27590 0.65 +1.4
6,015,725 - AO353_27590 0.65 +0.0
6,015,725 - AO353_27590 0.65 +0.4
6,015,725 - AO353_27590 0.65 -1.0
6,015,725 - AO353_27590 0.65 +0.8
6,015,725 - AO353_27590 0.65 +0.6
6,015,725 - AO353_27590 0.65 +2.0
6,015,725 - AO353_27590 0.65 -1.8

Or see this region's nucleotide sequence